Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DQM39_RS05060 Genome accession   NZ_LS483298
Coordinates   934366..934554 (+) Length   62 a.a.
NCBI ID   WP_002984426.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8225     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 929366..939554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM39_RS05025 (NCTC8225_01007) - 929942..930103 (+) 162 WP_002987333.1 hypothetical protein -
  DQM39_RS05030 (NCTC8225_01008) - 930106..930723 (+) 618 WP_111680849.1 DUF1366 domain-containing protein -
  DQM39_RS05035 (NCTC8225_01009) - 930733..931008 (+) 276 WP_002987582.1 hypothetical protein -
  DQM39_RS05040 (NCTC8225_01010) - 931005..931232 (+) 228 WP_003058873.1 phage holin -
  DQM39_RS05045 (NCTC8225_01012) - 931348..932553 (+) 1206 WP_002984418.1 glucosaminidase domain-containing protein -
  DQM39_RS05050 (NCTC8225_01013) - 932623..933057 (-) 435 WP_011017966.1 hypothetical protein -
  DQM39_RS05055 (NCTC8225_01014) sda3 933328..934128 (-) 801 WP_011285611.1 streptodornase Sda3 -
  DQM39_RS05060 (NCTC8225_01015) prx 934366..934554 (+) 189 WP_002984426.1 hypothetical protein Regulator
  DQM39_RS05070 (NCTC8225_01017) - 935145..935759 (+) 615 WP_002989607.1 TVP38/TMEM64 family protein -
  DQM39_RS05075 (NCTC8225_01018) - 935890..936675 (-) 786 WP_002984433.1 hypothetical protein -
  DQM39_RS05080 (NCTC8225_01019) - 936685..937383 (-) 699 WP_002984437.1 ABC transporter ATP-binding protein -
  DQM39_RS05085 (NCTC8225_01020) - 937383..937754 (-) 372 WP_032467272.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7253.32 Da        Isoelectric Point: 4.2550

>NTDB_id=1135473 DQM39_RS05060 WP_002984426.1 934366..934554(+) (prx) [Streptococcus pyogenes strain NCTC8225]
MLTYDEFKQAIDRGYITGDTVMIVRKNGQIFDYVLPHEKVKNGEVVTEEIVEEVMVELDYIK

Nucleotide


Download         Length: 189 bp        

>NTDB_id=1135473 DQM39_RS05060 WP_002984426.1 934366..934554(+) (prx) [Streptococcus pyogenes strain NCTC8225]
ATGCTAACATACGACGAGTTTAAACAAGCGATTGACCGTGGATATATCACAGGAGACACAGTTATGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTTTTGCCACATGAGAAAGTAAAAAATGGAGAAGTTGTGACCGAGGAGATAGTGGAAGAAG
TGATGGTGGAATTAGACTATATCAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

90.323

100

0.903
  prx Streptococcus pyogenes MGAS8232

87.931

93.548

0.823
  prx Streptococcus pyogenes MGAS315

87.931

93.548

0.823
  prx Streptococcus pyogenes MGAS315

83.051

95.161

0.79
  prx Streptococcus pyogenes MGAS315

79.661

95.161

0.758
  prx Streptococcus pyogenes MGAS315

87.805

66.129

0.581
  prx Streptococcus pyogenes MGAS315

78.571

67.742

0.532

Multiple sequence alignment