Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   XTG_RS17200 Genome accession   NZ_LR994544
Coordinates   4099488..4100621 (+) Length   377 a.a.
NCBI ID   WP_104583280.1    Uniprot ID   -
Organism   Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4078702..4101231 4099488..4100621 within 0


Gene organization within MGE regions


Location: 4078702..4101231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XTG_RS17110 (XTG_003422) - 4078702..4079652 (+) 951 WP_115677898.1 glycosyltransferase family 2 protein -
  XTG_RS17115 (XTG_003423) - 4079745..4080065 (+) 321 WP_232087983.1 GtrA family protein -
  XTG_RS17120 (XTG_003424) - 4080106..4082286 (+) 2181 WP_115677896.1 hypothetical protein -
  XTG_RS17125 (XTG_003425) - 4082522..4082791 (-) 270 WP_146009944.1 hypothetical protein -
  XTG_RS17130 (XTG_003426) - 4083185..4084126 (-) 942 WP_115677895.1 NAD-dependent epimerase/dehydratase family protein -
  XTG_RS17135 (XTG_003427) gmd 4084110..4085144 (-) 1035 WP_012439287.1 GDP-mannose 4,6-dehydratase -
  XTG_RS17140 (XTG_003428) - 4085222..4085809 (-) 588 WP_235858485.1 glycosyltransferase -
  XTG_RS17145 (XTG_003429) - 4085857..4087605 (-) 1749 WP_115677894.1 glycosyltransferase -
  XTG_RS17150 (XTG_003430) - 4087626..4088687 (-) 1062 WP_104583286.1 glycosyltransferase family 4 protein -
  XTG_RS17155 (XTG_003431) - 4088737..4091025 (-) 2289 WP_235858484.1 methyltransferase domain-containing protein -
  XTG_RS17160 (XTG_003432) - 4091065..4092351 (-) 1287 WP_102580569.1 ABC transporter ATP-binding protein -
  XTG_RS17165 (XTG_003433) - 4092348..4093133 (-) 786 WP_042827951.1 ABC transporter permease -
  XTG_RS17170 (XTG_003434) - 4093226..4094509 (-) 1284 WP_235858483.1 glycosyltransferase family 4 protein -
  XTG_RS17175 (XTG_003435) - 4094602..4095801 (-) 1200 WP_104583284.1 cystathionine gamma-synthase -
  XTG_RS17180 (XTG_003436) - 4095903..4097273 (-) 1371 WP_104583283.1 pyridoxal-phosphate dependent enzyme -
  XTG_RS17185 (XTG_003437) - 4097555..4097773 (-) 219 WP_002814034.1 YdcH family protein -
  XTG_RS17190 (XTG_003438) - 4098119..4099009 (-) 891 WP_115677892.1 hypothetical protein -
  XTG_RS17195 (XTG_003439) - 4099006..4099389 (-) 384 WP_039525328.1 DUF4398 domain-containing protein -
  XTG_RS17200 (XTG_003440) pilU 4099488..4100621 (+) 1134 WP_104583280.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41795.16 Da        Isoelectric Point: 6.1401

>NTDB_id=1134998 XTG_RS17200 WP_104583280.1 4099488..4100621(+) (pilU) [Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALQDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVVSLRLVKGVDGRRRPATEVLLNTPMIRDLLRRGQVHEVKQAMEESLEEGMQTFDQCL
FRMVKSGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYETAAAPKISHGFI

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=1134998 XTG_RS17200 WP_104583280.1 4099488..4100621(+) (pilU) [Xanthomonas euroxanthea isolate X. euroxanthea CPBF 424]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAGAAGAATGCCTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAAGGCAAGCTCTACCCGCTCGGCAATACGGGGTTGCCGCCGGGAATGGTCAAGAAAATCGCCTACTCGC
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGCGAGCTGGAACTCAACATGGCCATCGCCCTGCAGGACGCCGGCCGC
TTCCGCGTGAACGTGTTCAAGCAGCGTGGCGAGGTGGGCATGGTGATCCGCGCCATCCGCAGCCGGATTCCCAGCATCGA
AGAGCTGAACCTGCCGCAGGTGCTCAAGGACGTCATCATGACCCCGCGCGGGCTGGTGCTGGTTGTCGGCTCGACCGGCT
CGGGCAAGTCGACCTCGCTGGCCTCGATGATCGACCACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATATCTGCACAAGCACAAGATGTCGATCGTGAACCAGCGCGAGGTGGGCCTGGACACGCATGCCTTCCAGAG
TGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGACGCCGAGACCATGGAGGCGG
CGATCGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACGCTGCACTCCAACAACGCAGACCAGACCATCGAGCGCATC
CTCAATTTCTTTCCCGAGAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAATCTGCGCGCCGTGGTGTCGCTGCG
CCTGGTCAAGGGCGTGGACGGACGCCGCCGGCCGGCGACCGAGGTACTGCTCAACACGCCGATGATCCGCGATCTGCTGC
GCCGCGGCCAGGTGCACGAGGTCAAGCAGGCGATGGAAGAATCGCTGGAAGAAGGCATGCAGACCTTCGACCAGTGCCTG
TTCCGCATGGTCAAGTCCGGCGAAATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGACGGGCTGGCGCTGAA
GTTCCGCCTGTCCGAGGGCGGCTCCGGCGAGCACGACCCGTATGCGGACTACGAAACGGCAGCGGCACCGAAGATCAGCC
ACGGCTTTATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(74-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.089

95.225

0.496
  pilU Vibrio cholerae strain A1552

48.889

95.491

0.467
  pilU Acinetobacter baylyi ADP1

49.153

93.899

0.462
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.979

100

0.446
  pilT Pseudomonas aeruginosa PAK

42.308

89.655

0.379
  pilT Legionella pneumophila strain ERS1305867

41.124

89.655

0.369
  pilT Legionella pneumophila strain Lp02

41.124

89.655

0.369
  pilT Acinetobacter baumannii D1279779

40.828

89.655

0.366
  pilT Pseudomonas stutzeri DSM 10701

40.828

89.655

0.366
  pilT Acinetobacter nosocomialis M2

40.828

89.655

0.366
  pilT Acinetobacter baumannii strain A118

40.828

89.655

0.366
  pilT Acinetobacter baylyi ADP1

40.294

90.186

0.363

Multiple sequence alignment