Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | H7A87_RS15005 | Genome accession | NZ_LR861805 |
| Coordinates | 3531396..3531815 (-) | Length | 139 a.a. |
| NCBI ID | WP_119127582.1 | Uniprot ID | - |
| Organism | Xanthomonas sp. CPBF 426 isolate | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3526396..3536815
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7A87_RS14990 (XSP_003011) | - | 3527403..3528947 (-) | 1545 | WP_119127587.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| H7A87_RS14995 (XSP_003012) | - | 3528949..3529410 (-) | 462 | WP_147421061.1 | GtrA family protein | - |
| H7A87_RS15000 (XSP_003013) | - | 3529407..3531314 (-) | 1908 | WP_119127584.1 | hypothetical protein | - |
| H7A87_RS15005 (XSP_003014) | pilA2 | 3531396..3531815 (-) | 420 | WP_119127582.1 | pilin | Machinery gene |
| H7A87_RS15010 (XSP_003015) | pilC | 3532169..3533428 (+) | 1260 | WP_119127987.1 | type II secretion system F family protein | Machinery gene |
| H7A87_RS15015 (XSP_003016) | - | 3533435..3534298 (+) | 864 | WP_002812278.1 | A24 family peptidase | - |
| H7A87_RS15020 (XSP_003017) | coaE | 3534312..3534935 (+) | 624 | WP_119127580.1 | dephospho-CoA kinase | - |
| H7A87_RS15025 (XSP_003018) | - | 3535460..3535855 (+) | 396 | WP_119127579.1 | SymE family type I addiction module toxin | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14092.09 Da Isoelectric Point: 9.0169
>NTDB_id=1132460 H7A87_RS15005 WP_119127582.1 3531396..3531815(-) (pilA2) [Xanthomonas sp. CPBF 426 isolate]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYLVKSRVSEVVLAASSARTTVSEAAASDTGANMPATVNIESQSSKYVS
GVAYAQSGASGVITATAKDLGGSTPTGTITLTGTKGANGQVSWVCSGSIAAKYRPSTCQ
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYLVKSRVSEVVLAASSARTTVSEAAASDTGANMPATVNIESQSSKYVS
GVAYAQSGASGVITATAKDLGGSTPTGTITLTGTKGANGQVSWVCSGSIAAKYRPSTCQ
Nucleotide
Download Length: 420 bp
>NTDB_id=1132460 H7A87_RS15005 WP_119127582.1 3531396..3531815(-) (pilA2) [Xanthomonas sp. CPBF 426 isolate]
ATGAAGAAGCAGCAAGGTTTTACCCTTATCGAACTGATGATCGTAGTCGCGATCATTGCCATCCTGGCAGCCATTGCTCT
GCCGGCGTATCAGGACTACCTGGTCAAGTCGCGTGTGTCGGAAGTCGTGCTAGCTGCCTCGTCGGCTCGCACCACTGTCT
CCGAGGCTGCCGCTTCTGACACCGGCGCAAACATGCCGGCGACTGTTAATATCGAGTCGCAGTCCTCCAAATACGTATCG
GGCGTTGCGTATGCACAGAGCGGCGCTAGTGGCGTGATCACCGCAACTGCAAAGGATTTGGGCGGTAGCACTCCCACTGG
CACGATTACGCTTACCGGCACCAAGGGTGCTAACGGCCAGGTCAGTTGGGTGTGCAGCGGCTCCATCGCCGCCAAGTACC
GCCCATCTACCTGCCAGTAA
ATGAAGAAGCAGCAAGGTTTTACCCTTATCGAACTGATGATCGTAGTCGCGATCATTGCCATCCTGGCAGCCATTGCTCT
GCCGGCGTATCAGGACTACCTGGTCAAGTCGCGTGTGTCGGAAGTCGTGCTAGCTGCCTCGTCGGCTCGCACCACTGTCT
CCGAGGCTGCCGCTTCTGACACCGGCGCAAACATGCCGGCGACTGTTAATATCGAGTCGCAGTCCTCCAAATACGTATCG
GGCGTTGCGTATGCACAGAGCGGCGCTAGTGGCGTGATCACCGCAACTGCAAAGGATTTGGGCGGTAGCACTCCCACTGG
CACGATTACGCTTACCGGCACCAAGGGTGCTAACGGCCAGGTCAGTTGGGTGTGCAGCGGCTCCATCGCCGCCAAGTACC
GCCCATCTACCTGCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila strain ERS1305867 |
50.35 |
100 |
0.518 |
| comP | Acinetobacter baylyi ADP1 |
46.711 |
100 |
0.511 |
| pilA2 | Legionella pneumophila str. Paris |
49.65 |
100 |
0.511 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
34.783 |
100 |
0.46 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.323 |
100 |
0.46 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.411 |
100 |
0.417 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
35.404 |
100 |
0.41 |
| pilE | Neisseria gonorrhoeae MS11 |
34.756 |
100 |
0.41 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.86 |
100 |
0.41 |
| pilA | Pseudomonas aeruginosa PAK |
36.364 |
100 |
0.403 |
| pilA | Acinetobacter baumannii strain A118 |
37.324 |
100 |
0.381 |