Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H7A87_RS15010 Genome accession   NZ_LR861805
Coordinates   3532169..3533428 (+) Length   419 a.a.
NCBI ID   WP_119127987.1    Uniprot ID   -
Organism   Xanthomonas sp. CPBF 426 isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3527169..3538428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A87_RS14990 (XSP_003011) - 3527403..3528947 (-) 1545 WP_119127587.1 NAD(P)/FAD-dependent oxidoreductase -
  H7A87_RS14995 (XSP_003012) - 3528949..3529410 (-) 462 WP_147421061.1 GtrA family protein -
  H7A87_RS15000 (XSP_003013) - 3529407..3531314 (-) 1908 WP_119127584.1 hypothetical protein -
  H7A87_RS15005 (XSP_003014) pilA2 3531396..3531815 (-) 420 WP_119127582.1 pilin Machinery gene
  H7A87_RS15010 (XSP_003015) pilC 3532169..3533428 (+) 1260 WP_119127987.1 type II secretion system F family protein Machinery gene
  H7A87_RS15015 (XSP_003016) - 3533435..3534298 (+) 864 WP_002812278.1 A24 family peptidase -
  H7A87_RS15020 (XSP_003017) coaE 3534312..3534935 (+) 624 WP_119127580.1 dephospho-CoA kinase -
  H7A87_RS15025 (XSP_003018) - 3535460..3535855 (+) 396 WP_119127579.1 SymE family type I addiction module toxin -
  H7A87_RS15030 (XSP_003019) - 3535961..3537295 (-) 1335 WP_164739182.1 HAMP domain-containing sensor histidine kinase -
  H7A87_RS15035 (XSP_003020) - 3537288..3537965 (-) 678 WP_006448355.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46022.46 Da        Isoelectric Point: 10.2875

>NTDB_id=1132461 H7A87_RS15010 WP_119127987.1 3532169..3533428(+) (pilC) [Xanthomonas sp. CPBF 426 isolate]
MSVARSAIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAVIVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLLVTVGSIVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1132461 H7A87_RS15010 WP_119127987.1 3532169..3533428(+) (pilC) [Xanthomonas sp. CPBF 426 isolate]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTTGTTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGTTGCGCCGTC
AGGGCATAGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCCCTGTTTGGAGCGGCAGGCAAGAAGATTACCGCCAAAGAC
ATCGCGTTCTTCAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTACCTATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACAGACATCGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACACCCCGTCCAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGTGAAGGTGCCGGTGTGCTGGAG
ACTGTCCTAGATACGGTCGCCACGTACAAAGAAAACATCGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAGTCATTGTGAGTGCGATTTTGCTTATTTTCGTGGTCCCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGTGCTGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCCTCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGTTGTTGGTGACAGTTGGATCTATCGTCGGATTCATCTTCGCTTACAAACGTTCTCCACGGATGCAGCATGGACTCGA
TCGATTGATCCTCAAGGTCCCCGTGATTGGACAGATCATGCACAACAGTGCAATTGCGCGCTTTGCACGGACGACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTGGTGGAGGCACTCGGGATCGTAGCTGGCGCCACTGGCAACAAGGTGTATGAAGAG
GCCGTTTTCAGGATGCGGGACGATGTGTCAGTCGGCTACCCGGTCAACATGGCGATGAAACAAGTGAATCTGTTTCCTCA
CATGGTGGTGCAGATGACCGCGATCGGCGAAGAGGCAGGCGCCCTGGATACCATGCTGTTCAAGGTGGCCGACTACTTCG
AGCAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGTTGGAGCCGCTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTTGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

94.511

0.518
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Acinetobacter baylyi ADP1

50.864

96.659

0.492
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.108

95.227

0.411
  pilG Neisseria meningitidis 44/76-A

42.5

95.465

0.406
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Thermus thermophilus HB27

39.5

95.465

0.377
  pilC Vibrio campbellii strain DS40M4

39.25

95.465

0.375

Multiple sequence alignment