Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   H7A86_RS17085 Genome accession   NZ_LR861803
Coordinates   4118585..4119718 (+) Length   377 a.a.
NCBI ID   WP_104583280.1    Uniprot ID   -
Organism   Xanthomonas euroxanthea isolate     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4113585..4124718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A86_RS17060 (XSP_003430) - 4113898..4114881 (-) 984 WP_119131787.1 glycosyltransferase family 2 protein -
  H7A86_RS17065 (XSP_003431) - 4115001..4116371 (-) 1371 WP_104583283.1 pyridoxal-phosphate dependent enzyme -
  H7A86_RS17070 (XSP_003432) - 4116652..4116870 (-) 219 WP_002814034.1 YdcH family protein -
  H7A86_RS17075 (XSP_003433) - 4117216..4118106 (-) 891 WP_119131786.1 hypothetical protein -
  H7A86_RS17080 (XSP_003434) - 4118103..4118486 (-) 384 WP_039525328.1 DUF4398 domain-containing protein -
  H7A86_RS17085 (XSP_003435) pilU 4118585..4119718 (+) 1134 WP_104583280.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  H7A86_RS17090 (XSP_003436) maiA 4120391..4121053 (-) 663 WP_119131785.1 maleylacetoacetate isomerase -
  H7A86_RS17095 (XSP_003437) - 4121097..4122155 (-) 1059 WP_180708170.1 fumarylacetoacetate hydrolase family protein -
  H7A86_RS17100 (XSP_003439) - 4122465..4123853 (+) 1389 WP_104649381.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41795.16 Da        Isoelectric Point: 6.1401

>NTDB_id=1132445 H7A86_RS17085 WP_104583280.1 4118585..4119718(+) (pilU) [Xanthomonas euroxanthea isolate]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALQDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELNLPQVLKDVIMTPRGLVLVVGSTGSGKSTSLASMIDHRNSTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVVSLRLVKGVDGRRRPATEVLLNTPMIRDLLRRGQVHEVKQAMEESLEEGMQTFDQCL
FRMVKSGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYETAAAPKISHGFI

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=1132445 H7A86_RS17085 WP_104583280.1 4118585..4119718(+) (pilU) [Xanthomonas euroxanthea isolate]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAGAAGAATGCCTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAAGGCAAGCTCTACCCGCTCGGCAATACGGGGTTGCCGCCGGGAATGGTCAAGAAAATCGCCTACTCGC
TGATGGACGAAGGCCAGGTGCCGCAGTTCGAGCGCGAGCTGGAACTCAACATGGCCATCGCCCTGCAAGACGCCGGCCGC
TTCCGCGTGAACGTGTTCAAGCAGCGTGGCGAGGTGGGCATGGTGATCCGCGCCATCCGCAGCCGGATTCCCAGCATCGA
AGAGCTGAACCTGCCGCAGGTGCTCAAGGACGTCATCATGACCCCGCGCGGGCTGGTGCTGGTGGTCGGCTCGACCGGCT
CGGGCAAGTCGACCTCGCTGGCCTCGATGATCGACCACCGCAACAGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAGTATCTGCACAAGCACAAGATGTCGATCGTGAACCAGCGCGAGGTGGGCCTGGACACGCATGCCTTCCAGAG
CGCGTTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGACGCCGAGACCATGGAGGCGG
CGATCGCCTTCGCCGAGACTGGCCACCTGTGCCTGGCGACGCTGCACTCCAACAATGCCGACCAGACCATCGAGCGCATC
CTCAATTTCTTTCCCGAGAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTGAATCTGCGCGCCGTGGTATCGCTGCG
CCTGGTCAAGGGCGTGGACGGACGCCGCCGGCCGGCGACCGAGGTACTGCTCAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGCCAGGTGCACGAGGTCAAGCAGGCGATGGAAGAATCGCTGGAAGAAGGCATGCAGACCTTCGACCAGTGCCTG
TTCCGCATGGTCAAGTCCGGCGAAATCGAGCAGGAGGAAGCGCTGCGCGCGGCCGACTCGCGCGACGGGCTGGCGCTGAA
GTTCCGCCTGTCCGAGGGCGGCTCCGGCGAGCACGACCCGTATGCGGACTACGAAACGGCAGCGGCACCGAAGATCAGCC
ACGGCTTTATCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(74-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.089

95.225

0.496
  pilU Vibrio cholerae strain A1552

48.889

95.491

0.467
  pilU Acinetobacter baylyi ADP1

49.153

93.899

0.462
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.979

100

0.446
  pilT Pseudomonas aeruginosa PAK

42.308

89.655

0.379
  pilT Legionella pneumophila strain ERS1305867

41.124

89.655

0.369
  pilT Legionella pneumophila strain Lp02

41.124

89.655

0.369
  pilT Acinetobacter baumannii D1279779

40.828

89.655

0.366
  pilT Pseudomonas stutzeri DSM 10701

40.828

89.655

0.366
  pilT Acinetobacter nosocomialis M2

40.828

89.655

0.366
  pilT Acinetobacter baumannii strain A118

40.828

89.655

0.366
  pilT Acinetobacter baylyi ADP1

40.294

90.186

0.363

Multiple sequence alignment