Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HAS68_RS02380 | Genome accession | NZ_CP002007 |
| Coordinates | 444397..444795 (+) | Length | 132 a.a. |
| NCBI ID | WP_022540565.1 | Uniprot ID | A0A0K2E4A3 |
| Organism | Streptococcus suis 05HAS68 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 435961..458982 | 444397..444795 | within | 0 |
Gene organization within MGE regions
Location: 435961..458982
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HAS68_RS02300 (HAS68_0394) | - | 435961..437118 (-) | 1158 | WP_024409220.1 | site-specific integrase | - |
| HAS68_RS02305 (HAS68_0395) | - | 437315..438046 (-) | 732 | WP_013730164.1 | hypothetical protein | - |
| HAS68_RS02310 (HAS68_0396) | - | 438094..438477 (-) | 384 | WP_013730165.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HAS68_RS02315 (HAS68_0397) | - | 438484..439032 (-) | 549 | WP_226960627.1 | helix-turn-helix transcriptional regulator | - |
| HAS68_RS02320 (HAS68_0398) | - | 439049..439249 (+) | 201 | WP_002937001.1 | helix-turn-helix transcriptional regulator | - |
| HAS68_RS02325 (HAS68_0399) | - | 439319..439687 (+) | 369 | WP_238580464.1 | hypothetical protein | - |
| HAS68_RS02330 | - | 439718..439972 (+) | 255 | WP_013730167.1 | hypothetical protein | - |
| HAS68_RS02335 (HAS68_0400) | - | 440028..440261 (+) | 234 | WP_226960628.1 | hypothetical protein | - |
| HAS68_RS11500 | - | 440251..440403 (+) | 153 | WP_022540561.1 | hypothetical protein | - |
| HAS68_RS02340 (HAS68_0401) | - | 440408..440749 (+) | 342 | WP_013730169.1 | hypothetical protein | - |
| HAS68_RS02345 (HAS68_0402) | - | 440749..441228 (+) | 480 | WP_013730170.1 | siphovirus Gp157 family protein | - |
| HAS68_RS02350 | - | 441225..441470 (+) | 246 | WP_013730171.1 | hypothetical protein | - |
| HAS68_RS02355 (HAS68_0403) | - | 441451..441915 (+) | 465 | WP_013730172.1 | hypothetical protein | - |
| HAS68_RS02360 (HAS68_0404) | - | 441884..443056 (+) | 1173 | WP_013730173.1 | DEAD/DEAH box helicase family protein | - |
| HAS68_RS02365 (HAS68_0405) | - | 443130..443396 (+) | 267 | WP_226960629.1 | hypothetical protein | - |
| HAS68_RS02370 (HAS68_0406) | - | 443406..444104 (+) | 699 | WP_013730175.1 | ERF family protein | - |
| HAS68_RS02375 | - | 444104..444400 (+) | 297 | WP_022540564.1 | hypothetical protein | - |
| HAS68_RS02380 (HAS68_0407) | ssbA | 444397..444795 (+) | 399 | WP_022540565.1 | single-stranded DNA-binding protein | Machinery gene |
| HAS68_RS02385 (HAS68_0408) | - | 444806..445633 (+) | 828 | WP_013730177.1 | bifunctional DNA primase/polymerase | - |
| HAS68_RS02390 (HAS68_0409) | - | 445617..446996 (+) | 1380 | WP_079253058.1 | virulence-associated E family protein | - |
| HAS68_RS11565 | - | 447353..447508 (+) | 156 | WP_013730179.1 | hypothetical protein | - |
| HAS68_RS02395 (HAS68_0410) | - | 447505..447813 (+) | 309 | WP_013730180.1 | DUF1372 family protein | - |
| HAS68_RS02400 (HAS68_0411) | - | 447815..448030 (+) | 216 | WP_013730181.1 | hypothetical protein | - |
| HAS68_RS02405 (HAS68_0412) | - | 448219..448533 (+) | 315 | WP_013730182.1 | hypothetical protein | - |
| HAS68_RS02410 (HAS68_0413) | - | 448606..449040 (+) | 435 | WP_002937915.1 | DUF1492 domain-containing protein | - |
| HAS68_RS02415 | - | 449137..449469 (+) | 333 | Protein_434 | HNH endonuclease signature motif containing protein | - |
| HAS68_RS02420 (HAS68_0414) | - | 449577..449936 (+) | 360 | WP_024409219.1 | hypothetical protein | - |
| HAS68_RS02425 (HAS68_0415) | - | 449933..451198 (+) | 1266 | WP_013730185.1 | phage portal protein | - |
| HAS68_RS11570 (HAS68_0416) | - | 451191..452411 (+) | 1221 | WP_013730186.1 | hypothetical protein | - |
| HAS68_RS02435 (HAS68_0417) | - | 452416..452649 (+) | 234 | WP_022540567.1 | hypothetical protein | - |
| HAS68_RS02440 (HAS68_0418) | - | 452851..454053 (-) | 1203 | WP_079398882.1 | IS110 family transposase | - |
| HAS68_RS11675 (HAS68_0419) | - | 454385..454648 (-) | 264 | Protein_440 | IS110 family transposase | - |
| HAS68_RS11680 | - | 454957..455241 (+) | 285 | Protein_441 | ISL3 family transposase | - |
| HAS68_RS02450 (HAS68_0420) | - | 455768..456406 (-) | 639 | WP_009909540.1 | MBL fold metallo-hydrolase | - |
| HAS68_RS02455 (HAS68_0421) | - | 456523..458982 (+) | 2460 | WP_226960630.1 | bifunctional DnaQ family exonuclease/ATP-dependent helicase | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 14872.45 Da Isoelectric Point: 4.6583
>NTDB_id=111593 HAS68_RS02380 WP_022540565.1 444397..444795(+) (ssbA) [Streptococcus suis 05HAS68]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNSQDGSFGNSSPMDIQDEDLPF
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNSQDGSFGNSSPMDIQDEDLPF
Nucleotide
Download Length: 399 bp
>NTDB_id=111593 HAS68_RS02380 WP_022540565.1 444397..444795(+) (ssbA) [Streptococcus suis 05HAS68]
ATGATTAACAATGTAGTACTAGTGGGACGCATGACTCGTGATGCAGAACTTCGTTACACTCCGTCAAACCAGGCGGTTGC
GACTTTTACCTTGGCTGTCAATCGAAACTTCAAAAATCAAGATGGGGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGCATTCAGACTCGT
AGCTATGACAATCAACAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGTCGTGG
ACAACAGTCGAATTCTCAAGACGGATCATTTGGAAATTCAAGTCCTATGGATATCCAAGACGAAGATTTGCCGTTCTAG
ATGATTAACAATGTAGTACTAGTGGGACGCATGACTCGTGATGCAGAACTTCGTTACACTCCGTCAAACCAGGCGGTTGC
GACTTTTACCTTGGCTGTCAATCGAAACTTCAAAAATCAAGATGGGGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGCATTCAGACTCGT
AGCTATGACAATCAACAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGTCGTGG
ACAACAGTCGAATTCTCAAGACGGATCATTTGGAAATTCAAGTCCTATGGATATCCAAGACGAAGATTTGCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.907 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.674 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
49.242 |
100 |
0.492 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
46.212 |
100 |
0.462 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.455 |
100 |
0.455 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
45.455 |
100 |
0.455 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
45.455 |
100 |
0.455 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
45.455 |
100 |
0.455 |
| ssbB/cilA | Streptococcus mitis SK321 |
45.455 |
100 |
0.455 |
| ssbA | Streptococcus mutans UA159 |
44.697 |
100 |
0.447 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.128 |
82.576 |
0.447 |
| ssb | Vibrio cholerae strain A1552 |
29.48 |
100 |
0.386 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
48.113 |
80.303 |
0.386 |