Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   B6D67_RS07425 Genome accession   NZ_LN831034
Coordinates   1392370..1392795 (-) Length   141 a.a.
NCBI ID   WP_011285575.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1387370..1397795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6D67_RS07380 (ERS445054_01474) - 1388439..1388873 (-) 435 WP_011888687.1 ArpU family phage packaging/lysis transcriptional regulator -
  B6D67_RS10280 (ERS445054_01475) - 1389157..1389327 (-) 171 WP_002987493.1 hypothetical protein -
  B6D67_RS07385 (ERS445054_01476) - 1389324..1389803 (-) 480 WP_011888686.1 DUF1642 domain-containing protein -
  B6D67_RS07390 (ERS445054_01477) - 1389808..1390440 (-) 633 WP_011888685.1 N-6 DNA methylase -
  B6D67_RS07395 (ERS445054_01478) - 1390442..1390726 (-) 285 WP_011018134.1 hypothetical protein -
  B6D67_RS10285 (ERS445054_01479) - 1390723..1390893 (-) 171 WP_002995952.1 hypothetical protein -
  B6D67_RS07400 (ERS445054_01480) - 1390890..1391126 (-) 237 WP_002995955.1 DUF3310 domain-containing protein -
  B6D67_RS10555 (ERS445054_01481) - 1391126..1391371 (-) 246 WP_011285573.1 hypothetical protein -
  B6D67_RS07410 (ERS445054_01482) - 1391368..1391724 (-) 357 WP_011284873.1 hypothetical protein -
  B6D67_RS07415 (ERS445054_01483) - 1391721..1392161 (-) 441 WP_011285574.1 RusA family crossover junction endodeoxyribonuclease -
  B6D67_RS07420 - 1392161..1392364 (-) 204 WP_011106686.1 hypothetical protein -
  B6D67_RS07425 (ERS445054_01484) ssb 1392370..1392795 (-) 426 WP_011285575.1 single-stranded DNA-binding protein Machinery gene
  B6D67_RS07430 (ERS445054_01485) - 1392788..1393462 (-) 675 WP_029714396.1 ERF family protein -
  B6D67_RS07435 (ERS445054_01486) - 1393463..1393945 (-) 483 WP_011018142.1 siphovirus Gp157 family protein -
  B6D67_RS07440 (ERS445054_01487) - 1393967..1394221 (-) 255 WP_011018143.1 hypothetical protein -
  B6D67_RS07445 (ERS445054_01488) - 1394202..1394555 (-) 354 WP_011285579.1 hypothetical protein -
  B6D67_RS07450 (ERS445054_01490) - 1394696..1395478 (-) 783 WP_011888684.1 ATP-binding protein -
  B6D67_RS07455 (ERS445054_01491) - 1395465..1396226 (-) 762 WP_014635613.1 DnaD domain protein -
  B6D67_RS07460 (ERS445054_01493) - 1396320..1396457 (-) 138 WP_011017881.1 hypothetical protein -
  B6D67_RS07465 (ERS445054_01494) - 1396488..1396739 (-) 252 WP_011888682.1 helix-turn-helix transcriptional regulator -
  B6D67_RS07470 (ERS445054_01495) - 1396810..1396995 (-) 186 WP_011054585.1 helix-turn-helix domain-containing protein -
  B6D67_RS07475 (ERS445054_01496) - 1397162..1397401 (+) 240 WP_011284879.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15995.63 Da        Isoelectric Point: 4.5748

>NTDB_id=1114241 B6D67_RS07425 WP_011285575.1 1392370..1392795(-) (ssb) [Streptococcus pyogenes strain NCTC8198]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQEQRVYVTEVVAESFQMLESRNSQQQSGQDNSSQNDNSQPFGNSNPMDISDDDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1114241 B6D67_RS07425 WP_011285575.1 1392370..1392795(-) (ssb) [Streptococcus pyogenes strain NCTC8198]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGAACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGAAA
TAGCCAGCAACAATCTGGTCAAGATAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATA
TTTCAGACGATGATCTGCCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.667
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.66
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.972

100

0.44
  ssbB/cilA Streptococcus pneumoniae Rx1

43.262

100

0.433
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.262

100

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

43.262

100

0.433
  ssbB/cilA Streptococcus pneumoniae D39

43.262

100

0.433
  ssbB/cilA Streptococcus pneumoniae R6

43.262

100

0.433
  ssbB/cilA Streptococcus mitis SK321

43.262

100

0.433
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

79.433

0.411
  ssbA Streptococcus mutans UA159

40.426

100

0.404
  ssb Glaesserella parasuis strain SC1401

29.379

100

0.369
  ssbB Lactococcus lactis subsp. cremoris KW2

49.524

74.468

0.369

Multiple sequence alignment