Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   KHN77_RS14875 Genome accession   NZ_HG999363
Coordinates   3501349..3501768 (-) Length   139 a.a.
NCBI ID   WP_119127582.1    Uniprot ID   -
Organism   Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3496349..3506768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN77_RS14860 (XCY_002972) - 3497356..3498900 (-) 1545 WP_119127587.1 NAD(P)/FAD-dependent oxidoreductase -
  KHN77_RS14865 (XCY_002973) - 3498902..3499363 (-) 462 WP_147421061.1 GtrA family protein -
  KHN77_RS14870 (XCY_002974) - 3499360..3501267 (-) 1908 WP_119127584.1 hypothetical protein -
  KHN77_RS14875 (XCY_002975) pilA2 3501349..3501768 (-) 420 WP_119127582.1 pilin Machinery gene
  KHN77_RS14880 (XCY_002976) pilC 3502122..3503381 (+) 1260 WP_119127987.1 type II secretion system F family protein Machinery gene
  KHN77_RS14885 (XCY_002977) - 3503388..3504251 (+) 864 WP_002812278.1 A24 family peptidase -
  KHN77_RS14890 (XCY_002978) coaE 3504265..3504888 (+) 624 WP_119127580.1 dephospho-CoA kinase -
  KHN77_RS14895 (XCY_002979) - 3505413..3505808 (+) 396 WP_119127579.1 SymE family type I addiction module toxin -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14092.09 Da        Isoelectric Point: 9.0169

>NTDB_id=1112656 KHN77_RS14875 WP_119127582.1 3501349..3501768(-) (pilA2) [Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYLVKSRVSEVVLAASSARTTVSEAAASDTGANMPATVNIESQSSKYVS
GVAYAQSGASGVITATAKDLGGSTPTGTITLTGTKGANGQVSWVCSGSIAAKYRPSTCQ

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1112656 KHN77_RS14875 WP_119127582.1 3501349..3501768(-) (pilA2) [Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis]
ATGAAGAAGCAGCAAGGTTTTACCCTTATCGAACTGATGATCGTAGTCGCGATCATTGCCATCCTGGCAGCCATTGCTCT
GCCGGCGTATCAGGACTACCTGGTCAAGTCGCGTGTGTCGGAAGTCGTGCTAGCTGCCTCGTCGGCTCGCACCACTGTCT
CCGAGGCTGCCGCTTCTGACACCGGCGCAAACATGCCGGCGACTGTTAATATCGAGTCGCAGTCCTCCAAATACGTATCG
GGCGTTGCGTATGCACAGAGCGGCGCTAGTGGCGTGATCACCGCAACTGCAAAGGATTTGGGCGGTAGCACTCCCACTGG
CACGATTACGCTTACCGGCACCAAGGGTGCTAACGGCCAGGTCAGTTGGGTGTGCAGCGGCTCCATCGCCGCCAAGTACC
GCCCATCTACCTGCCAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

50.35

100

0.518
  comP Acinetobacter baylyi ADP1

46.711

100

0.511
  pilA2 Legionella pneumophila str. Paris

49.65

100

0.511
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.783

100

0.46
  pilA Ralstonia pseudosolanacearum GMI1000

38.323

100

0.46
  pilA/pilA1 Eikenella corrodens VA1

38.411

100

0.417
  pilE Neisseria gonorrhoeae strain FA1090

35.404

100

0.41
  pilE Neisseria gonorrhoeae MS11

34.756

100

0.41
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.86

100

0.41
  pilA Pseudomonas aeruginosa PAK

36.364

100

0.403
  pilA Acinetobacter baumannii strain A118

37.324

100

0.381

Multiple sequence alignment