Detailed information NTG1112657

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: KHN77_RS14880
• Genome accession: NZ_HG999363
• Coordinates: 3502122..3503381 (+)
• Length: 419 a.a.
• NCBI ID: WP_119127987.1
• Uniprot ID: -
• Organism: Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3497122..3508381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHN77_RS14860 (XCY_002972)	-	3497356..3498900 (-)	1545	WP_119127587.1	NAD(P)/FAD-dependent oxidoreductase	-
KHN77_RS14865 (XCY_002973)	-	3498902..3499363 (-)	462	WP_147421061.1	GtrA family protein	-
KHN77_RS14870 (XCY_002974)	-	3499360..3501267 (-)	1908	WP_119127584.1	hypothetical protein	-
KHN77_RS14875 (XCY_002975)	pilA2	3501349..3501768 (-)	420	WP_119127582.1	pilin	Machinery gene
KHN77_RS14880 (XCY_002976)	pilC	3502122..3503381 (+)	1260	WP_119127987.1	type II secretion system F family protein	Machinery gene
KHN77_RS14885 (XCY_002977)	-	3503388..3504251 (+)	864	WP_002812278.1	A24 family peptidase	-
KHN77_RS14890 (XCY_002978)	coaE	3504265..3504888 (+)	624	WP_119127580.1	dephospho-CoA kinase	-
KHN77_RS14895 (XCY_002979)	-	3505413..3505808 (+)	396	WP_119127579.1	SymE family type I addiction module toxin	-
KHN77_RS14900 (XCY_002980)	-	3505914..3507248 (-)	1335	WP_164739182.1	HAMP domain-containing sensor histidine kinase	-
KHN77_RS14905 (XCY_002981)	-	3507241..3507918 (-)	678	WP_006448355.1	response regulator transcription factor	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46022.46 Da
• Isoelectric Point: 10.2875

>NTDB_id=1112657 KHN77_RS14880 WP_119127987.1 3502122..3503381(+) (pilC) [Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis]
MSVARSAIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAVIVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLLVTVGSIVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=1112657 KHN77_RS14880 WP_119127987.1 3502122..3503381(+) (pilC) [Xanthomonas euroxanthea isolate Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTTGTTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGTTGCGCCGTC
AGGGCATAGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCCCTGTTTGGAGCGGCAGGCAAGAAGATTACCGCCAAAGAC
ATCGCGTTCTTCAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTACCTATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACAGACATCGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACACCCCGTCCAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGTGAAGGTGCCGGTGTGCTGGAG
ACTGTCCTAGATACGGTCGCCACGTACAAAGAAAACATCGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAGTCATTGTGAGTGCGATTTTGCTTATTTTCGTGGTCCCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGTGCTGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCCTCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGTTGTTGGTGACAGTTGGATCTATCGTCGGATTCATCTTCGCTTACAAACGTTCTCCACGGATGCAGCATGGACTCGA
TCGATTGATCCTCAAGGTCCCCGTGATTGGACAGATCATGCACAACAGTGCAATTGCGCGCTTTGCACGGACGACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTGGTGGAGGCACTCGGGATCGTAGCTGGCGCCACTGGCAACAAGGTGTATGAAGAG
GCCGTTTTCAGGATGCGGGACGATGTGTCAGTCGGCTACCCGGTCAACATGGCGATGAAACAAGTGAATCTGTTTCCTCA
CATGGTGGTGCAGATGACCGCGATCGGCGAAGAGGCAGGCGCCCTGGATACCATGCTGTTCAAGGTGGCCGACTACTTCG
AGCAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGTTGGAGCCGCTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTTGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.798	94.511	0.518
pilC	Legionella pneumophila strain ERS1305867	52.709	96.897	0.511
pilC	Acinetobacter baylyi ADP1	50.864	96.659	0.492
pilC	Acinetobacter baumannii D1279779	50.123	96.659	0.484
pilG	Neisseria gonorrhoeae MS11	43.108	95.227	0.411
pilG	Neisseria meningitidis 44/76-A	42.5	95.465	0.406
pilC	Vibrio cholerae strain A1552	40.25	95.465	0.384
pilC	Thermus thermophilus HB27	39.5	95.465	0.377
pilC	Vibrio campbellii strain DS40M4	39.25	95.465	0.375