Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KHO07_RS04265 | Genome accession | NZ_HG995459 |
| Coordinates | 921491..921910 (+) | Length | 139 a.a. |
| NCBI ID | WP_075948424.1 | Uniprot ID | A0A1H0RDN8 |
| Organism | Pseudomonas sp. PP3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 916491..926910
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHO07_RS04240 | yacG | 916654..916854 (-) | 201 | WP_056855639.1 | DNA gyrase inhibitor YacG | - |
| KHO07_RS04245 | coaE | 916851..917474 (-) | 624 | WP_212626538.1 | dephospho-CoA kinase | - |
| KHO07_RS04250 | pilD | 917471..918343 (-) | 873 | WP_212626539.1 | A24 family peptidase | Machinery gene |
| KHO07_RS04255 | pilC | 918345..919562 (-) | 1218 | WP_212626540.1 | type II secretion system F family protein | Machinery gene |
| KHO07_RS04260 | pilB | 919565..921265 (-) | 1701 | WP_150734768.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KHO07_RS04265 | pilA | 921491..921910 (+) | 420 | WP_075948424.1 | pilin | Machinery gene |
| KHO07_RS04270 | - | 922565..924589 (+) | 2025 | Protein_840 | DUF3274 domain-containing protein | - |
| KHO07_RS04275 | - | 924586..926274 (+) | 1689 | WP_212626541.1 | DUF2875 family protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14317.61 Da Isoelectric Point: 8.1097
>NTDB_id=1112610 KHO07_RS04265 WP_075948424.1 921491..921910(+) (pilA) [Pseudomonas sp. PP3]
MKTQKGFTLIELLIVVAIIGILATFAIPAYSKYQARAKVTAGLAEISALKVPFEDLMNQGTDPDLTKVGGTATTSNCTTT
ASGKAADGTGEIACTILNAPGPVLNQTITLKRALTGWTCSTTVDQEFAPKGCAGVAPKV
MKTQKGFTLIELLIVVAIIGILATFAIPAYSKYQARAKVTAGLAEISALKVPFEDLMNQGTDPDLTKVGGTATTSNCTTT
ASGKAADGTGEIACTILNAPGPVLNQTITLKRALTGWTCSTTVDQEFAPKGCAGVAPKV
Nucleotide
Download Length: 420 bp
>NTDB_id=1112610 KHO07_RS04265 WP_075948424.1 921491..921910(+) (pilA) [Pseudomonas sp. PP3]
ATGAAGACTCAAAAAGGTTTTACCCTGATCGAGCTGCTGATCGTGGTGGCGATCATCGGCATTCTCGCGACGTTTGCGAT
ACCGGCGTACTCCAAGTACCAGGCGCGGGCCAAGGTCACGGCGGGGCTGGCGGAGATTTCGGCGTTGAAGGTGCCATTTG
AAGACTTGATGAACCAGGGAACCGACCCGGACCTGACAAAAGTGGGTGGTACGGCAACGACGTCGAACTGCACCACCACC
GCCTCGGGCAAGGCGGCTGACGGGACGGGTGAAATCGCCTGTACGATTCTGAATGCACCAGGGCCGGTGCTGAATCAAAC
CATCACTCTGAAACGCGCCCTGACCGGTTGGACTTGCTCCACGACGGTCGATCAGGAGTTCGCGCCGAAGGGGTGTGCCG
GTGTGGCACCCAAAGTCTGA
ATGAAGACTCAAAAAGGTTTTACCCTGATCGAGCTGCTGATCGTGGTGGCGATCATCGGCATTCTCGCGACGTTTGCGAT
ACCGGCGTACTCCAAGTACCAGGCGCGGGCCAAGGTCACGGCGGGGCTGGCGGAGATTTCGGCGTTGAAGGTGCCATTTG
AAGACTTGATGAACCAGGGAACCGACCCGGACCTGACAAAAGTGGGTGGTACGGCAACGACGTCGAACTGCACCACCACC
GCCTCGGGCAAGGCGGCTGACGGGACGGGTGAAATCGCCTGTACGATTCTGAATGCACCAGGGCCGGTGCTGAATCAAAC
CATCACTCTGAAACGCGCCCTGACCGGTTGGACTTGCTCCACGACGGTCGATCAGGAGTTCGCGCCGAAGGGGTGTGCCG
GTGTGGCACCCAAAGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
47.183 |
100 |
0.482 |
| pilA | Pseudomonas aeruginosa PAK |
42.953 |
100 |
0.46 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.324 |
100 |
0.453 |
| pilA | Vibrio cholerae C6706 |
41.135 |
100 |
0.417 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.135 |
100 |
0.417 |
| pilA | Vibrio cholerae strain A1552 |
41.135 |
100 |
0.417 |
| pilA2 | Legionella pneumophila str. Paris |
39.583 |
100 |
0.41 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.481 |
97.122 |
0.403 |
| comP | Acinetobacter baylyi ADP1 |
36.054 |
100 |
0.381 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.806 |
96.403 |
0.374 |