Detailed information NTG1112608

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: KHO07_RS04255
• Genome accession: NZ_HG995459
• Coordinates: 918345..919562 (-)
• Length: 405 a.a.
• NCBI ID: WP_212626540.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PP3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 913345..924562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHO07_RS04225	-	914166..915434 (+)	1269	WP_212626537.1	OprD family porin	-
KHO07_RS04230	-	915443..915685 (-)	243	WP_150734763.1	DUF2790 domain-containing protein	-
KHO07_RS04235	-	915936..916625 (+)	690	WP_150734764.1	energy-coupling factor ABC transporter permease	-
KHO07_RS04240	yacG	916654..916854 (-)	201	WP_056855639.1	DNA gyrase inhibitor YacG	-
KHO07_RS04245	coaE	916851..917474 (-)	624	WP_212626538.1	dephospho-CoA kinase	-
KHO07_RS04250	pilD	917471..918343 (-)	873	WP_212626539.1	A24 family peptidase	Machinery gene
KHO07_RS04255	pilC	918345..919562 (-)	1218	WP_212626540.1	type II secretion system F family protein	Machinery gene
KHO07_RS04260	pilB	919565..921265 (-)	1701	WP_150734768.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KHO07_RS04265	pilA	921491..921910 (+)	420	WP_075948424.1	pilin	Machinery gene

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44400.15 Da
• Isoelectric Point: 9.7884

>NTDB_id=1112608 KHO07_RS04255 WP_212626540.1 918345..919562(-) (pilC) [Pseudomonas sp. PP3]
MAVKAAKISVYAWEGTDRKGTKISGELSGQNPALVKAQLRKQGINPGKVRRKTTSIFDMGKRIKAHDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLVVVFVAMIVTTILLVKVVPQFQSVFEGFGAELPAFTVMVIGLSQFMQDWWWVMLGALIVAIFGVR
HTFRTSQGFRDRTDAWLLKLPLVGTLMYKSAVARFSRTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRTSGIFPNMATQMTAIGEESGALDDMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide

• Length: 1218 bp

>NTDB_id=1112608 KHO07_RS04255 WP_212626540.1 918345..919562(-) (pilC) [Pseudomonas sp. PP3]
ATGGCGGTCAAGGCAGCGAAAATCAGCGTGTATGCCTGGGAAGGCACAGACCGCAAAGGCACGAAAATCAGCGGCGAGTT
GAGTGGGCAGAACCCGGCACTGGTCAAGGCACAACTGCGCAAGCAAGGCATCAACCCCGGCAAGGTGCGCCGGAAAACCA
CGTCGATTTTCGACATGGGCAAACGCATCAAGGCCCACGATATCGCCCTCTTCACCCGGCAAATGGCGACGATGATGAAA
GCGGGTGTGCCGCTCCTGCAATCGTTCGACATCATCGGCGAAGGCTTCGACAACCCGGCGATGCGCAAACTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCAGGCAACAGCTTCGCCGCCGCCCTGCGCAAAAAACCGCAATATTTCGATGAGCTCTACT
GCAACCTGGTGGACGCCGGAGAGCAGGCCGGTGCGCTGGATACGCTGCTGGAGCGGGTGGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGCTGGTGGTGGTCTTCGTGGCGATGATCGTTACCACCAT
TCTGCTGGTCAAAGTGGTGCCACAGTTTCAATCGGTGTTCGAAGGGTTCGGTGCCGAATTGCCCGCCTTCACCGTCATGG
TCATTGGCCTTTCGCAGTTCATGCAGGATTGGTGGTGGGTCATGCTCGGCGCGCTGATTGTGGCGATTTTCGGGGTGCGC
CACACCTTCAGGACCTCACAGGGTTTTCGCGACCGCACGGACGCCTGGCTGCTGAAGCTGCCGCTGGTGGGCACCTTGAT
GTACAAGTCCGCGGTGGCCCGATTTTCCCGTACCCTGTCGACCACCTTCGCGGCCGGCGTACCGTTGGTGGAAGCCCTGG
AGTCAGTGGCCGGCGCCACCGGCAACATCGTGTTCAAACGGGCCGTGCTGCGCATCAAGCAGGACGTCTCGACAGGCATG
CAGCTGAATTTTTCCATGCGCACATCCGGCATTTTCCCGAACATGGCGACTCAGATGACCGCCATTGGCGAAGAGTCCGG
CGCACTGGATGACATGCTCGACAAGGTCGCCGGATTCTACGAGGACGAGGTCGACAACATGGTCGATAACCTGACCAGCC
TGATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGCGGATTGGTGGTTGCCATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (275-397)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	73.333	100	0.733
pilC	Acinetobacter baylyi ADP1	59.069	100	0.595
pilC	Acinetobacter baumannii D1279779	58.824	100	0.593
pilC	Legionella pneumophila strain ERS1305867	52.273	97.778	0.511
pilG	Neisseria gonorrhoeae MS11	43.284	99.259	0.43
pilG	Neisseria meningitidis 44/76-A	42.786	99.259	0.425
pilC	Vibrio cholerae strain A1552	42.929	97.778	0.42
pilC	Vibrio campbellii strain DS40M4	41.133	100	0.412
pilC	Thermus thermophilus HB27	38.404	99.012	0.38