Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KHN94_RS11555 | Genome accession | NZ_HG992758 |
| Coordinates | 2564392..2564796 (+) | Length | 134 a.a. |
| NCBI ID | WP_182031852.1 | Uniprot ID | - |
| Organism | Vibrio sp. B1FLJ16 isolate B1REV17 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2559392..2569796
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHN94_RS11540 (ACOMICROBIO_LOCUS1675) | pdhR | 2561149..2561916 (-) | 768 | WP_182031850.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| KHN94_RS11545 | ampD | 2562327..2562871 (-) | 545 | Protein_2257 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| KHN94_RS11550 (ACOMICROBIO_LOCUS1678) | nadC | 2563243..2564130 (+) | 888 | WP_182031851.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| KHN94_RS11555 (ACOMICROBIO_LOCUS1679) | pilA | 2564392..2564796 (+) | 405 | WP_182031852.1 | pilin | Machinery gene |
| KHN94_RS11560 (ACOMICROBIO_LOCUS1680) | pilB | 2564796..2566481 (+) | 1686 | WP_182031853.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KHN94_RS11565 (ACOMICROBIO_LOCUS1681) | pilC | 2566512..2567735 (+) | 1224 | WP_182031854.1 | type II secretion system F family protein | Machinery gene |
| KHN94_RS11570 | - | 2567806..2568676 (+) | 871 | Protein_2262 | A24 family peptidase | - |
| KHN94_RS11575 (ACOMICROBIO_LOCUS1683) | coaE | 2568677..2569291 (+) | 615 | WP_182031856.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 14044.13 Da Isoelectric Point: 5.0486
>NTDB_id=1112527 KHN94_RS11555 WP_182031852.1 2564392..2564796(+) (pilA) [Vibrio sp. B1FLJ16 isolate B1REV17]
MKPVKQKKQQGFTLIELMIVVAIIGVLSAFAIPAYKDYVRKSEVASAVATMKSLITPAELYYQENGDITTSTNLSDLGIS
SGSTTLGTLSPKAGQIELALTNISGAKITITRDANAGWVCDATGDADSLVTGCQ
MKPVKQKKQQGFTLIELMIVVAIIGVLSAFAIPAYKDYVRKSEVASAVATMKSLITPAELYYQENGDITTSTNLSDLGIS
SGSTTLGTLSPKAGQIELALTNISGAKITITRDANAGWVCDATGDADSLVTGCQ
Nucleotide
Download Length: 405 bp
>NTDB_id=1112527 KHN94_RS11555 WP_182031852.1 2564392..2564796(+) (pilA) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGAAACCAGTTAAACAGAAAAAACAGCAAGGTTTTACGCTGATTGAATTAATGATAGTGGTGGCGATTATTGGGGTGTT
GTCAGCTTTCGCTATTCCAGCATATAAAGACTATGTGAGAAAAAGTGAAGTTGCTTCAGCAGTTGCTACTATGAAATCTC
TTATTACCCCCGCAGAACTTTACTATCAAGAAAACGGTGATATTACTACCTCAACCAACCTAAGTGATTTAGGCATTTCA
TCGGGCTCAACCACCCTTGGAACACTTTCTCCAAAAGCTGGCCAAATAGAGCTAGCCCTAACAAATATTAGTGGAGCTAA
AATCACGATAACCAGAGATGCTAATGCTGGTTGGGTTTGTGATGCTACTGGTGATGCAGATAGCTTGGTTACTGGTTGTC
AATAG
ATGAAACCAGTTAAACAGAAAAAACAGCAAGGTTTTACGCTGATTGAATTAATGATAGTGGTGGCGATTATTGGGGTGTT
GTCAGCTTTCGCTATTCCAGCATATAAAGACTATGTGAGAAAAAGTGAAGTTGCTTCAGCAGTTGCTACTATGAAATCTC
TTATTACCCCCGCAGAACTTTACTATCAAGAAAACGGTGATATTACTACCTCAACCAACCTAAGTGATTTAGGCATTTCA
TCGGGCTCAACCACCCTTGGAACACTTTCTCCAAAAGCTGGCCAAATAGAGCTAGCCCTAACAAATATTAGTGGAGCTAA
AATCACGATAACCAGAGATGCTAATGCTGGTTGGGTTTGTGATGCTACTGGTGATGCAGATAGCTTGGTTACTGGTTGTC
AATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
54.286 |
100 |
0.567 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.333 |
100 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
39.333 |
100 |
0.44 |
| pilA | Vibrio cholerae C6706 |
39.333 |
100 |
0.44 |
| pilA | Pseudomonas aeruginosa PAK |
38.776 |
100 |
0.425 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.857 |
100 |
0.396 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.259 |
100 |
0.396 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
34.965 |
100 |
0.373 |
| pilA | Acinetobacter baumannii strain A118 |
36.029 |
100 |
0.366 |