Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KHN94_RS11565 Genome accession   NZ_HG992758
Coordinates   2566512..2567735 (+) Length   407 a.a.
NCBI ID   WP_182031854.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2561512..2572735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS11545 ampD 2562327..2562871 (-) 545 Protein_2257 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KHN94_RS11550 (ACOMICROBIO_LOCUS1678) nadC 2563243..2564130 (+) 888 WP_182031851.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KHN94_RS11555 (ACOMICROBIO_LOCUS1679) pilA 2564392..2564796 (+) 405 WP_182031852.1 pilin Machinery gene
  KHN94_RS11560 (ACOMICROBIO_LOCUS1680) pilB 2564796..2566481 (+) 1686 WP_182031853.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KHN94_RS11565 (ACOMICROBIO_LOCUS1681) pilC 2566512..2567735 (+) 1224 WP_182031854.1 type II secretion system F family protein Machinery gene
  KHN94_RS11570 - 2567806..2568676 (+) 871 Protein_2262 A24 family peptidase -
  KHN94_RS11575 (ACOMICROBIO_LOCUS1683) coaE 2568677..2569291 (+) 615 WP_182031856.1 dephospho-CoA kinase -
  KHN94_RS11580 (ACOMICROBIO_LOCUS1684) zapD 2569319..2570059 (+) 741 WP_182031857.1 cell division protein ZapD -
  KHN94_RS11585 (ACOMICROBIO_EPCKBFOG_02371) yacG 2570164..2570358 (+) 195 WP_182031858.1 DNA gyrase inhibitor YacG -
  KHN94_RS11590 (ACOMICROBIO_LOCUS1685) rplS 2570729..2571082 (-) 354 WP_145532528.1 50S ribosomal protein L19 -
  KHN94_RS11595 (ACOMICROBIO_LOCUS1686) trmD 2571124..2571885 (-) 762 WP_182008850.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KHN94_RS11600 (ACOMICROBIO_LOCUS1687) rimM 2571913..2572461 (-) 549 WP_182008851.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45100.30 Da        Isoelectric Point: 10.2277

>NTDB_id=1112529 KHN94_RS11565 WP_182031854.1 2566512..2567735(+) (pilC) [Vibrio sp. B1FLJ16 isolate B1REV17]
MKTTTPQLKNFRWKGINSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKGSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVMALKLVSNNHKKAEMKSTLMSVTRAVEAGTPMSKAMRTASNHFDALYTDLIATGEQSGNLAEVFERLATYREK
SEELRAKVIKALIYPAMVILVALGVSFLMLTQVIPEFEKMFSGFGADLPWFTRQVLDLSDWMQNWGSFIGLGALSLIISA
RIMVKRSDSFRLMMDRALLKIPILGAVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTSGNMHYQLAVEEVYRDTAAG
MPMYVAMRNCDVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1112529 KHN94_RS11565 WP_182031854.1 2566512..2567735(+) (pilC) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGAAAACCACTACCCCACAACTCAAAAACTTCCGTTGGAAAGGCATTAACAGCTCAGGTAAAAAAACCTCCGGTCAAAC
TCTCGCCATGAGTGAAATCGAAGTTCGTGAACGTTTAGATGCCCAGCATATAAAAATCAAAAAGCTCAAGAAGGGCAGCA
TTTCTTTTTTAACCAAACTAAGTCACCGCGTAAAAGGCAAAGACATTACTGTTTTTACCCGCCAGATCTCCACCATGCTG
GTGACAGGGGTACCGTTAGTCATGGCTTTGAAGCTGGTATCCAATAACCATAAAAAAGCCGAGATGAAATCGACACTAAT
GAGCGTTACTCGCGCGGTAGAGGCTGGCACGCCGATGTCGAAGGCGATGCGCACAGCGAGTAATCACTTTGATGCCCTAT
ATACGGATCTCATTGCTACAGGTGAACAGTCGGGGAACCTTGCCGAAGTCTTTGAACGACTGGCCACCTACCGGGAAAAG
AGCGAAGAACTTCGCGCCAAAGTGATCAAAGCACTAATCTACCCAGCGATGGTCATCTTAGTAGCCCTCGGTGTATCGTT
TTTGATGCTGACACAAGTCATTCCTGAGTTTGAAAAAATGTTCTCCGGCTTTGGTGCTGATTTACCGTGGTTTACCCGAC
AAGTACTCGATTTGTCAGACTGGATGCAAAACTGGGGTTCGTTTATTGGACTAGGCGCACTGAGCTTAATTATCTCTGCC
CGAATCATGGTCAAACGTTCGGACTCCTTCCGTTTAATGATGGATAGAGCCTTATTGAAAATTCCCATTTTAGGCGCAGT
ATTATCTAAAGCCGCCATCGCCAAATTTAGCCGCACTCTTGCCACCAGCTTTAGCGCCGGTATTCCGATATTGACCAGCC
TAAAAACCACATCGAAAACCTCAGGCAACATGCATTACCAACTGGCGGTTGAAGAAGTCTACCGTGACACCGCCGCAGGT
ATGCCGATGTATGTAGCGATGCGCAACTGTGATGTGTTCCCCGAACTGGTGCTGCAAATGGTGATGATCGGCGAAGAGTC
AGGACGACTGGATGATATGCTCAATAAAGTCGCAACGATTTATGAATTTGAAGTTGATAATACCGTCGATAACTTAAGTA
AGATTCTCGAACCATTAATTATCGTCTTTCTTGGGGTCGTCGTTGGTGGTCTCGTCACTGCTATGTATCTGCCAATCTTT
AACTTGATGAGCGTATTAGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.732

100

0.867
  pilC Vibrio cholerae strain A1552

73.58

99.509

0.732
  pilC Acinetobacter baylyi ADP1

42

98.28

0.413
  pilC Acinetobacter baumannii D1279779

41.5

98.28

0.408
  pilC Legionella pneumophila strain ERS1305867

40.541

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.75

98.28

0.4
  pilG Neisseria meningitidis 44/76-A

40.5

98.28

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.152

97.297

0.391

Multiple sequence alignment