Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KJB05_RS03535 | Genome accession | NZ_HG992742 |
| Coordinates | 741016..741420 (-) | Length | 134 a.a. |
| NCBI ID | WP_038878904.1 | Uniprot ID | - |
| Organism | Vibrio sp. B1ASS3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 736016..746420
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KJB05_RS03515 (ACOMICROBIO_LOCUS459) | coaE | 736517..737131 (-) | 615 | WP_208445166.1 | dephospho-CoA kinase | - |
| KJB05_RS03520 (ACOMICROBIO_LOCUS460) | pilD | 737132..738001 (-) | 870 | WP_208445167.1 | A24 family peptidase | Machinery gene |
| KJB05_RS03525 (ACOMICROBIO_LOCUS461) | pilC | 738074..739297 (-) | 1224 | WP_009707569.1 | type II secretion system F family protein | Machinery gene |
| KJB05_RS03530 (ACOMICROBIO_LOCUS462) | pilB | 739331..741016 (-) | 1686 | WP_208445168.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KJB05_RS03535 (ACOMICROBIO_LOCUS463) | pilA | 741016..741420 (-) | 405 | WP_038878904.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| KJB05_RS03540 (ACOMICROBIO_LOCUS464) | nadC | 741685..742572 (-) | 888 | WP_208445169.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| KJB05_RS03545 (ACOMICROBIO_LOCUS465) | ampD | 742665..743216 (+) | 552 | WP_208445170.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| KJB05_RS03550 (ACOMICROBIO_LOCUS466) | pdhR | 743621..744388 (+) | 768 | WP_005438026.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13941.05 Da Isoelectric Point: 6.2606
>NTDB_id=1112390 KJB05_RS03535 WP_038878904.1 741016..741420(-) (pilA) [Vibrio sp. B1ASS3]
MKTNKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKDYVKKSEVASAVATMKSLITPAELYYQENGDITTSTNLGDLGIS
SGSTSLGTLAPKAGQIELSLTNISGAKITITRDANAGWICDATGDAADLVTGCK
MKTNKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKDYVKKSEVASAVATMKSLITPAELYYQENGDITTSTNLGDLGIS
SGSTSLGTLAPKAGQIELSLTNISGAKITITRDANAGWICDATGDAADLVTGCK
Nucleotide
Download Length: 405 bp
>NTDB_id=1112390 KJB05_RS03535 WP_038878904.1 741016..741420(-) (pilA) [Vibrio sp. B1ASS3]
ATGAAAACGAATAAACAGAAAAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTAGCAATTATTGGTGTTTT
GTCAGCTGTAGCTATCCCTGCATATAAAGATTATGTAAAGAAAAGCGAAGTCGCATCTGCCGTTGCAACAATGAAGTCTT
TAATTACACCAGCAGAGCTTTACTACCAAGAAAATGGGGATATCACAACCTCGACTAACTTAGGAGACTTGGGAATATCC
TCTGGCTCAACAAGTTTGGGGACACTTGCACCAAAAGCAGGACAAATTGAGTTGTCATTAACAAACATTAGTGGCGCTAA
AATTACAATAACTAGAGACGCAAATGCTGGTTGGATCTGTGACGCTACAGGTGACGCTGCAGACTTAGTAACTGGCTGTA
AATAG
ATGAAAACGAATAAACAGAAAAAGCAGCAAGGTTTTACGCTGATTGAATTGATGATTGTGGTAGCAATTATTGGTGTTTT
GTCAGCTGTAGCTATCCCTGCATATAAAGATTATGTAAAGAAAAGCGAAGTCGCATCTGCCGTTGCAACAATGAAGTCTT
TAATTACACCAGCAGAGCTTTACTACCAAGAAAATGGGGATATCACAACCTCGACTAACTTAGGAGACTTGGGAATATCC
TCTGGCTCAACAAGTTTGGGGACACTTGCACCAAAAGCAGGACAAATTGAGTTGTCATTAACAAACATTAGTGGCGCTAA
AATTACAATAACTAGAGACGCAAATGCTGGTTGGATCTGTGACGCTACAGGTGACGCTGCAGACTTAGTAACTGGCTGTA
AATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
55 |
100 |
0.575 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.667 |
100 |
0.455 |
| pilA | Vibrio cholerae strain A1552 |
40.667 |
100 |
0.455 |
| pilA | Vibrio cholerae C6706 |
40.667 |
100 |
0.455 |
| pilA | Pseudomonas aeruginosa PAK |
39.456 |
100 |
0.433 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.176 |
100 |
0.418 |
| pilA | Haemophilus influenzae 86-028NP |
37.879 |
98.507 |
0.373 |
| comP | Acinetobacter baylyi ADP1 |
34.266 |
100 |
0.366 |
| pilA | Acinetobacter baumannii strain A118 |
36.029 |
100 |
0.366 |