Detailed information NTG1112387

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KJB05_RS03520
• Genome accession: NZ_HG992742
• Coordinates: 737132..738001 (-)
• Length: 289 a.a.
• NCBI ID: WP_208445167.1
• Uniprot ID: A0A812FDE2
• Organism: Vibrio sp. B1ASS3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 732132..743001

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KJB05_RS03490 (ACOMICROBIO_LOCUS453)	trmD	732614..733357 (+)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
KJB05_RS03495 (ACOMICROBIO_LOCUS454)	rplS	733399..733752 (+)	354	WP_005438036.1	50S ribosomal protein L19	-
KJB05_RS03500	-	733938..735140 (+)	1203	Protein_611	IS4-like element ISVsa5 family transposase	-
KJB05_RS03505 (ACOMICROBIO_NCLOACGD_00716)	yacG	735492..735692 (-)	201	WP_027726863.1	DNA gyrase inhibitor YacG	-
KJB05_RS03510 (ACOMICROBIO_LOCUS458)	zapD	735749..736489 (-)	741	WP_038897986.1	cell division protein ZapD	-
KJB05_RS03515 (ACOMICROBIO_LOCUS459)	coaE	736517..737131 (-)	615	WP_208445166.1	dephospho-CoA kinase	-
KJB05_RS03520 (ACOMICROBIO_LOCUS460)	pilD	737132..738001 (-)	870	WP_208445167.1	A24 family peptidase	Machinery gene
KJB05_RS03525 (ACOMICROBIO_LOCUS461)	pilC	738074..739297 (-)	1224	WP_009707569.1	type II secretion system F family protein	Machinery gene
KJB05_RS03530 (ACOMICROBIO_LOCUS462)	pilB	739331..741016 (-)	1686	WP_208445168.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KJB05_RS03535 (ACOMICROBIO_LOCUS463)	pilA	741016..741420 (-)	405	WP_038878904.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
KJB05_RS03540 (ACOMICROBIO_LOCUS464)	nadC	741685..742572 (-)	888	WP_208445169.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32565.80 Da
• Isoelectric Point: 7.8235

>NTDB_id=1112387 KJB05_RS03520 WP_208445167.1 737132..738001(-) (pilD) [Vibrio sp. B1ASS3]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEKLTLSVPRSSCQQCGTQIRIR
DNIPVISWLLLRGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALSGISPVNLQDSIIGAMAGYLCLWSVYCLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1112387 KJB05_RS03520 WP_208445167.1 737132..738001(-) (pilD) [Vibrio sp. B1ASS3]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTGCCACGATTTTCGGTTTGATCGTGGGTAGTTTCCTCAA
CGTTGTAATTTATCGATTACCCAAAATCATGGAATTAGAATGGCGACGCGAATGCGCGGAATCATTCCCTGAATACAAAA
TCGAACCACCAAAAGAGAAGCTGACATTAAGCGTACCACGCTCATCTTGTCAGCAATGTGGCACGCAAATTCGTATTCGT
GACAATATCCCAGTGATTAGTTGGCTGCTTCTACGCGGTAAATGTCACAACTGCCAATCTCCTATCAGTGCACGCTACCC
TCTTATCGAACTGCTTACTGCCTTTTGTTCGGGTTTTATCGCTTTTCACTTCGGTTTTAGCTACTTCACTGTCGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCCGCCACATTTATCGATCTCGATACCATGTTGTTGCCAGACCAGCTTACATTGCCA
TTAATGTGGGCAGGTATTGCGCTCGCGCTTTCTGGTATCAGCCCAGTTAACCTACAAGACTCCATCATTGGTGCTATGGC
AGGTTATCTGTGTCTGTGGAGTGTTTACTGTTTGTTTAAGCTCCTTACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCAGCTTTAGGGGCTTGGTTGGGTTGGCAATCTCTACCAATGATCATTTTGCTTTCATCCGTAGTGGGCGTC
ATCTTTGGTCTTATCCAACTGCGTTTGCAAAAGCAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCAATTGC
GGGATGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A812FDE2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.578	100	0.976
pilD	Vibrio cholerae strain A1552	75	99.654	0.747
pilD	Acinetobacter nosocomialis M2	52.364	95.156	0.498
pilD	Acinetobacter baumannii D1279779	52.747	94.464	0.498
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436