Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KJB05_RS03525 Genome accession   NZ_HG992742
Coordinates   738074..739297 (-) Length   407 a.a.
NCBI ID   WP_009707569.1    Uniprot ID   A0A812FEE4
Organism   Vibrio sp. B1ASS3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 733074..744297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS03495 (ACOMICROBIO_LOCUS454) rplS 733399..733752 (+) 354 WP_005438036.1 50S ribosomal protein L19 -
  KJB05_RS03500 - 733938..735140 (+) 1203 Protein_611 IS4-like element ISVsa5 family transposase -
  KJB05_RS03505 (ACOMICROBIO_NCLOACGD_00716) yacG 735492..735692 (-) 201 WP_027726863.1 DNA gyrase inhibitor YacG -
  KJB05_RS03510 (ACOMICROBIO_LOCUS458) zapD 735749..736489 (-) 741 WP_038897986.1 cell division protein ZapD -
  KJB05_RS03515 (ACOMICROBIO_LOCUS459) coaE 736517..737131 (-) 615 WP_208445166.1 dephospho-CoA kinase -
  KJB05_RS03520 (ACOMICROBIO_LOCUS460) pilD 737132..738001 (-) 870 WP_208445167.1 A24 family peptidase Machinery gene
  KJB05_RS03525 (ACOMICROBIO_LOCUS461) pilC 738074..739297 (-) 1224 WP_009707569.1 type II secretion system F family protein Machinery gene
  KJB05_RS03530 (ACOMICROBIO_LOCUS462) pilB 739331..741016 (-) 1686 WP_208445168.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KJB05_RS03535 (ACOMICROBIO_LOCUS463) pilA 741016..741420 (-) 405 WP_038878904.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KJB05_RS03540 (ACOMICROBIO_LOCUS464) nadC 741685..742572 (-) 888 WP_208445169.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KJB05_RS03545 (ACOMICROBIO_LOCUS465) ampD 742665..743216 (+) 552 WP_208445170.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44910.22 Da        Isoelectric Point: 10.3176

>NTDB_id=1112388 KJB05_RS03525 WP_009707569.1 738074..739297(-) (pilC) [Vibrio sp. B1ASS3]
MKTITPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKLSHRVKGKDITVFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFVGFGADLPAFTQMVLDLSAWTQNWGPFIGLGFLSLLIGS
KVISNRSDSFKLLLARSSLKIPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1112388 KJB05_RS03525 WP_009707569.1 738074..739297(-) (pilC) [Vibrio sp. B1ASS3]
ATGAAAACCATCACTCCTCAACTTAAGAACTACCGTTGGAAAGGCATCAATAGCTCGGGCAAAAAGACCTCAGGTAATGT
CCTTGCCATGACGGAAATCGAAGTAAGAGAACGCCTCGATGCTCAACACATCAAAATCAAGAAACTGAAAAAGGGCAGTA
TTTCTTTTATTACTAAACTGAGCCACAGAGTCAAAGGGAAAGACATCACGGTGTTTACCCGTCAGATCGCTACTATGCTG
ATGACAGGCGTCCCAATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCATAAAAAAGCGGAAATGAAATCGATTTTAAT
GAGTGTCACAAGGGCTGTTGAAGCCGGAACACCAATGTCGAAAGCCATGCGTACCGCTAGCACGCATTTTGATCCGCTTT
ATACCGATTTAATCGCAACGGGTGAGCAGTCCGGTAACTTATCCCAAGTCTTCGAGCGTTTGGCAACCTACAGAGAAAAA
AGCGAACAGTTGCGCGCGAAAGTGATCAAAGCACTGATTTATCCGGCCATGGTTGTCTTGGTTGCCCTAGGGGTTTCCTA
CCTAATGCTGACCCGGGTCATCCCTGAGTTTGAAAAGATGTTTGTCGGCTTTGGTGCGGATTTACCTGCTTTTACTCAGA
TGGTATTAGACCTCTCTGCTTGGACTCAAAACTGGGGCCCTTTCATTGGACTCGGTTTCTTGAGTCTCTTGATCGGCTCA
AAAGTCATATCGAACCGCTCTGATTCTTTCAAGCTATTGCTCGCACGATCCAGTTTAAAGATTCCCATCTTGGGCCCTGT
TTTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACGCTTGCCACCAGTTTTAGTGCCGGTATCCCAATCCTCACCGCGT
TAAAAACCACCTCAAAGACCTCGGGTAACATGCACTATCAATTGGCAATCGAAGAAGTATACAGAGACACGGCTGCGGGC
ATGCCAATGTATATTGCCATGCGCAACTGCAATGTCTTCCCCGAGCTAGTATTGCAAATGGTCATGATTGGCGAAGAATC
TGGCCGCTTGGATGACATGCTCAACAAGATTGCTGCAATTTACGAGTTTGAGGTCGACAATACCGTCGATAACCTAAGTA
AGATTTTAGAGCCACTTATCATCGTTTTTCTCGGTGTCGTTGTTGGCGGTTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTGATGAGCGTATTGGGATAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

95.577

100

0.956
  pilC Vibrio cholerae strain A1552

73.827

99.509

0.735
  pilC Acinetobacter baylyi ADP1

42.04

98.771

0.415
  pilG Neisseria meningitidis 44/76-A

40.098

100

0.403
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilC Acinetobacter baumannii D1279779

40.75

98.28

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilG Neisseria gonorrhoeae MS11

39.851

99.263

0.396

Multiple sequence alignment