Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LOK39_RS15315 Genome accession   NZ_HG992337
Coordinates   3605093..3605521 (-) Length   142 a.a.
NCBI ID   WP_104593849.1    Uniprot ID   A0AAU9IHY3
Organism   Xanthomonas arboricola strain 1314c isolate 1314c     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3600093..3610521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK39_RS15305 (XA1314C_30140) pilR 3601365..3602759 (+) 1395 WP_047127086.1 sigma-54 dependent transcriptional regulator Regulator
  LOK39_RS15310 (XA1314C_30150) pilB 3603222..3604955 (-) 1734 WP_228599917.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOK39_RS15315 (XA1314C_30160) pilA 3605093..3605521 (-) 429 WP_104593849.1 pilin Machinery gene
  LOK39_RS15320 (XA1314C_30170) pilC 3605861..3607123 (+) 1263 WP_104593888.1 type II secretion system F family protein Machinery gene
  LOK39_RS15325 (XA1314C_30180) - 3607130..3607993 (+) 864 WP_002812278.1 A24 family peptidase -
  LOK39_RS15330 (XA1314C_30190) coaE 3608007..3608630 (+) 624 WP_039525803.1 dephospho-CoA kinase -
  LOK39_RS15335 (XA1314C_30200) - 3608730..3608885 (+) 156 Protein_3006 SymE family type I addiction module toxin -
  LOK39_RS15340 (XA1314C_30210) - 3608989..3610323 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14328.38 Da        Isoelectric Point: 9.1206

>NTDB_id=1112316 LOK39_RS15315 WP_104593849.1 3605093..3605521(-) (pilA) [Xanthomonas arboricola strain 1314c isolate 1314c]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VTAATGNITVTTTDKAGGGTIIFAPTANGAALASGTVPSDRISWDCKGGTLAAKYRPAECRN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1112316 LOK39_RS15315 WP_104593849.1 3605093..3605521(-) (pilA) [Xanthomonas arboricola strain 1314c isolate 1314c]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAACTGATGATCGTTGTCGCGATCATCGCAATTCTTGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCGTTCGCGGCCGTGTCTCTGAAGCAATGGTCGCCGCATCAGCCGCCAAGACTGTGGTGG
CCGAGAACGCCGCTAACGGCTCTGCCCTGAATAGCGGTTGGACCGCCCCTACGGCAACGAACAATGTTGCCAGCGTAGCC
GTTACTGCTGCTACGGGCAACATCACTGTGACCACTACCGATAAGGCTGGTGGCGGCACAATTATTTTTGCTCCCACTGC
TAACGGCGCTGCACTGGCTTCCGGCACCGTTCCCAGCGATCGTATTTCTTGGGATTGCAAAGGCGGTACCTTGGCTGCAA
AGTATCGCCCGGCTGAATGCCGCAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

52.201

100

0.585
  pilA2 Legionella pneumophila str. Paris

54.795

100

0.563
  pilA2 Legionella pneumophila strain ERS1305867

54.795

100

0.563
  comP Acinetobacter baylyi ADP1

48.408

100

0.535
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

39.247

100

0.514
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.096

100

0.423
  pilA Acinetobacter baumannii strain A118

39.716

99.296

0.394
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.286

98.592

0.387
  pilA Vibrio cholerae C6706

34.416

100

0.373
  pilA Vibrio cholerae strain A1552

34.416

100

0.373
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.416

100

0.373

Multiple sequence alignment