Detailed information NTG1111275

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: ACNR9V_RS01545
• Genome accession: NZ_CP184786
• Coordinates: 297246..297590 (+)
• Length: 114 a.a.
• NCBI ID: WP_003247808.1
• Uniprot ID: A0AB38R2G4
• Organism: Parageobacillus thermoglucosidasius strain W-36
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 292246..302590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNR9V_RS01510 (ACNR9V_01510)	-	292714..293169 (+)	456	WP_003247799.1	DUF1284 domain-containing protein	-
ACNR9V_RS01515 (ACNR9V_01515)	-	293156..293275 (+)	120	WP_233504762.1	histidine kinase	-
ACNR9V_RS01520 (ACNR9V_01520)	-	293308..294684 (+)	1377	WP_420768635.1	aspartate kinase	-
ACNR9V_RS01525 (ACNR9V_01525)	-	294681..294809 (-)	129	WP_260440516.1	hypothetical protein	-
ACNR9V_RS01530 (ACNR9V_01530)	-	294898..295863 (+)	966	WP_420768636.1	processed acidic surface protein	-
ACNR9V_RS01535 (ACNR9V_01535)	-	295869..296477 (+)	609	WP_420768637.1	class D sortase	-
ACNR9V_RS01540 (ACNR9V_01540)	-	296496..296948 (-)	453	WP_013876155.1	YwpF-like family protein	-
ACNR9V_RS01545 (ACNR9V_01545)	ssbB	297246..297590 (+)	345	WP_003247808.1	single-stranded DNA-binding protein	Machinery gene
ACNR9V_RS01550 (ACNR9V_01550)	-	297741..298151 (-)	411	WP_041270013.1	helix-turn-helix domain-containing protein	-
ACNR9V_RS01555 (ACNR9V_01555)	-	298357..298857 (+)	501	WP_003247812.1	hypothetical protein	-
ACNR9V_RS01560 (ACNR9V_01560)	-	299097..299429 (-)	333	WP_125009121.1	hypothetical protein	-
ACNR9V_RS01565 (ACNR9V_01565)	-	299558..300916 (+)	1359	WP_125009122.1	peptidoglycan-binding protein	-
ACNR9V_RS01570 (ACNR9V_01570)	wecB	301269..302414 (+)	1146	WP_003247816.1	non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase	-

Sequence

Protein

• Length: 114 a.a.
• Molecular weight: 12789.63 Da
• Isoelectric Point: 9.6276

>NTDB_id=1111275 ACNR9V_RS01545 WP_003247808.1 297246..297590(+) (ssbB) [Parageobacillus thermoglucosidasius strain W-36]
MINQVVLVGRLTKDPELRYTADGAAVVNITLAVTRNFRNAEGGIDTDFVQCTLWRKVAENTANYCRKGSIIGVMGRIQTR
NYEKKDGQRVFVTEVVAESVRFMGGKTHAWIEHS

Nucleotide

• Length: 345 bp

>NTDB_id=1111275 ACNR9V_RS01545 WP_003247808.1 297246..297590(+) (ssbB) [Parageobacillus thermoglucosidasius strain W-36]
ATGATCAACCAAGTCGTGCTTGTCGGCCGGCTGACAAAAGATCCGGAACTTCGATATACCGCCGATGGAGCAGCGGTCGT
TAACATCACATTAGCGGTGACAAGAAATTTTCGTAATGCGGAAGGAGGAATTGACACTGATTTCGTCCAATGCACGCTCT
GGCGGAAAGTAGCGGAGAATACGGCGAATTATTGCCGGAAAGGTTCCATTATCGGCGTCATGGGACGGATTCAAACGCGA
AATTATGAAAAGAAAGACGGACAGCGAGTGTTTGTGACAGAAGTGGTAGCCGAATCCGTGCGATTTATGGGCGGCAAGAC
GCATGCATGGATCGAACATTCATAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Bacillus subtilis subsp. subtilis str. 168	66.981	92.982	0.623
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.551	93.86	0.596
ssb	Latilactobacillus sakei subsp. sakei 23K	57.009	93.86	0.535
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.593	94.737	0.404
ssbA	Streptococcus mutans UA159	41.667	94.737	0.395
ssbB/cilA	Streptococcus mitis NCTC 12261	39.815	94.737	0.377
ssbB/cilA	Streptococcus pneumoniae TIGR4	39.815	94.737	0.377
ssbB	Lactococcus lactis subsp. cremoris KW2	38.053	99.123	0.377
ssbB/cilA	Streptococcus pneumoniae Rx1	38.889	94.737	0.368
ssbB/cilA	Streptococcus pneumoniae D39	38.889	94.737	0.368
ssbB/cilA	Streptococcus pneumoniae R6	38.889	94.737	0.368
ssbB/cilA	Streptococcus mitis SK321	38.889	94.737	0.368
ssb	Vibrio cholerae strain A1552	36.842	100	0.368