Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   HZ99_RS14275 Genome accession   NZ_CP008896
Coordinates   3201591..3202235 (+) Length   214 a.a.
NCBI ID   WP_038443767.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain UK4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3196591..3207235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ99_RS14245 (HZ99_14595) - 3196850..3197812 (+) 963 WP_038443757.1 NAD(P)H-dependent flavin oxidoreductase -
  HZ99_RS14250 (HZ99_14600) - 3197883..3198845 (+) 963 WP_038443759.1 DUF805 domain-containing protein -
  HZ99_RS14255 (HZ99_14605) - 3198909..3199694 (+) 786 WP_038443760.1 SDR family NAD(P)-dependent oxidoreductase -
  HZ99_RS14260 (HZ99_14610) - 3199741..3200079 (+) 339 WP_038443761.1 histidine triad nucleotide-binding protein -
  HZ99_RS14265 (HZ99_14615) coq7 3200229..3200876 (+) 648 WP_038443763.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  HZ99_RS14270 (HZ99_14620) - 3200934..3201356 (-) 423 WP_038443765.1 OsmC family protein -
  HZ99_RS14275 (HZ99_14625) crp 3201591..3202235 (+) 645 WP_038443767.1 cAMP-activated global transcriptional regulator CRP Regulator
  HZ99_RS14280 (HZ99_14630) - 3202232..3202927 (-) 696 WP_038443768.1 lipoate--protein ligase family protein -
  HZ99_RS14285 (HZ99_14635) trpC 3203066..3203902 (-) 837 WP_038443770.1 indole-3-glycerol phosphate synthase TrpC -
  HZ99_RS14290 (HZ99_14640) trpD 3203899..3204948 (-) 1050 WP_029296763.1 anthranilate phosphoribosyltransferase -
  HZ99_RS14295 (HZ99_14645) - 3204958..3205551 (-) 594 WP_038443772.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24320.25 Da        Isoelectric Point: 8.4883

>NTDB_id=110764 HZ99_RS14275 WP_038443767.1 3201591..3202235(+) (crp) [Pseudomonas fluorescens strain UK4]
MVAITPTPKIKNLDKLLTHCQRRRYPAKQNIICAGERSETLFFIIKGSVTILIEDEDGREMIIAYLNTGDFFGELGLFEQ
AGKEQERSAWVRAKVECEVAEISYTKFRELAQQDPEILYALSGQIAQRLRNTTRKVGDLAFFDVTGRVARCLLELCKQPD
AMTHPDGMQIKVTRQEIGRIVGCSREMVGRVLKDLEERNLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=110764 HZ99_RS14275 WP_038443767.1 3201591..3202235(+) (crp) [Pseudomonas fluorescens strain UK4]
ATGGTTGCTATTACCCCCACACCCAAGATCAAGAACCTCGATAAGTTACTGACCCATTGCCAACGCCGGCGCTATCCAGC
CAAGCAGAACATTATCTGCGCCGGGGAACGCTCGGAGACCCTGTTCTTCATTATCAAAGGTTCGGTCACGATCCTGATCG
AGGATGAAGACGGCCGCGAAATGATCATCGCCTACCTCAATACCGGTGATTTTTTCGGGGAACTGGGGCTGTTTGAGCAA
GCCGGCAAAGAACAGGAGCGCAGCGCCTGGGTGAGGGCCAAGGTCGAGTGTGAGGTCGCAGAAATCAGCTATACAAAATT
TCGTGAGCTGGCCCAACAAGATCCGGAAATCCTCTACGCCCTGAGCGGCCAGATTGCCCAGCGCCTGCGCAATACCACGC
GCAAGGTCGGCGACCTGGCGTTCTTCGACGTCACCGGGCGTGTCGCCCGCTGCCTGCTGGAACTGTGCAAGCAGCCGGAT
GCCATGACCCATCCCGACGGCATGCAAATCAAGGTCACTCGCCAGGAAATCGGGCGGATCGTCGGTTGTTCGAGGGAGAT
GGTCGGTCGAGTGCTCAAGGATCTGGAAGAGCGCAACCTGGTTCACGTCAAAGGCAAGACAATGGTGGTGTTCGGCACCC
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(170-200)

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

65.517

94.86

0.621
  crp Haemophilus influenzae Rd KW20

58.911

94.393

0.556
  crp Acinetobacter baumannii D1279779

51.659

98.598

0.509

Multiple sequence alignment