Detailed information NTG0110766

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACGJAX_RS01930
• Genome accession: NZ_AP035776
• Coordinates: 405904..406776 (+)
• Length: 290 a.a.
• NCBI ID: WP_248915556.1
• Uniprot ID: -
• Organism: Pseudomonas moorei strain m318
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 400904..411776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGJAX_RS01915 (PMm318_A03670)	-	403183..403536 (-)	354	WP_090325225.1	BON domain-containing protein	-
ACGJAX_RS01920 (PMm318_A03680)	pilA	403845..404264 (-)	420	WP_390957292.1	pilin	Machinery gene
ACGJAX_RS01925 (PMm318_A03690)	pilC	404685..405902 (+)	1218	WP_390957293.1	type II secretion system F family protein	Machinery gene
ACGJAX_RS01930 (PMm318_A03700)	pilD	405904..406776 (+)	873	WP_248915556.1	A24 family peptidase	Machinery gene
ACGJAX_RS01935 (PMm318_A03710)	coaE	406773..407396 (+)	624	WP_390957294.1	dephospho-CoA kinase	-
ACGJAX_RS01940 (PMm318_A03720)	yacG	407393..407593 (+)	201	WP_248915558.1	DNA gyrase inhibitor YacG	-
ACGJAX_RS01945 (PMm318_A03730)	-	407603..407818 (-)	216	WP_047533370.1	hypothetical protein	-
ACGJAX_RS01950 (PMm318_A03740)	-	407882..408571 (-)	690	WP_247254694.1	energy-coupling factor ABC transporter permease	-
ACGJAX_RS01955 (PMm318_A03750)	-	408568..409035 (-)	468	WP_390957295.1	FAD/FMN-containing dehydrogenase	-
ACGJAX_RS01960 (PMm318_A03760)	-	409163..409789 (+)	627	WP_090325235.1	DUF1780 domain-containing protein	-
ACGJAX_RS01965 (PMm318_A03770)	-	409786..410313 (+)	528	WP_390957296.1	MOSC domain-containing protein	-
ACGJAX_RS01970 (PMm318_A03780)	-	410368..410541 (+)	174	WP_047533382.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32252.79 Da
• Isoelectric Point: 8.8009

>NTDB_id=110766 ACGJAX_RS01930 WP_248915556.1 405904..406776(+) (pilD) [Pseudomonas moorei strain m318]
MPLNEILAHYPLAFVVIAGVIGLLVGSFLNVLIWRLPKMLEREWRMQAHDILGLPGETPLPTYNLLLPHSQCPHCGHRIR
AWENIPLLSFVLLRGRCSACAAPISKRYPLTELACSLVSAFIAWHFGFGWAACMTLLLTWGLLAMSLIDARHQLLPDVLV
LPLMWLGLIVNSLGLFVPLQDALWGAVAGYMALWSVFWLFKLITGKDGMGYGDFKLLAMFGAWGGWQILPLTILLSSLAG
AFIGLICLRLRKAKTSTPIPFGPYLAIAGWIALLWGVQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=110766 ACGJAX_RS01930 WP_248915556.1 405904..406776(+) (pilD) [Pseudomonas moorei strain m318]
ATGCCCCTGAACGAAATTCTTGCCCACTACCCGCTAGCCTTTGTCGTCATCGCCGGGGTGATCGGCCTGCTCGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAGTGGCGCATGCAGGCCCATGACATTCTCGGGC
TTCCCGGCGAAACACCGCTGCCGACCTACAACCTGCTGCTCCCCCACTCCCAGTGCCCGCACTGCGGTCACCGGATTCGG
GCCTGGGAAAACATTCCGCTGCTCAGTTTCGTTCTGCTGCGCGGACGCTGTTCGGCCTGTGCGGCACCGATCAGCAAACG
CTACCCGCTGACTGAGCTCGCCTGCAGCCTGGTGTCGGCATTCATCGCCTGGCACTTCGGCTTCGGCTGGGCAGCCTGCA
TGACTCTGCTGCTGACCTGGGGACTGCTGGCCATGAGCCTGATCGACGCCAGGCATCAACTGTTACCGGACGTGCTGGTG
CTGCCGCTGATGTGGCTGGGGCTGATCGTCAACAGTCTCGGCCTGTTCGTGCCGTTGCAGGATGCATTATGGGGCGCAGT
CGCCGGCTATATGGCGCTGTGGTCGGTGTTTTGGTTGTTCAAACTGATCACCGGCAAGGACGGCATGGGCTATGGCGATT
TCAAATTGCTGGCGATGTTTGGCGCCTGGGGTGGCTGGCAGATATTGCCGCTCACTATCCTGCTTTCGTCCCTCGCAGGC
GCCTTTATTGGCTTGATTTGCTTGCGCCTGCGCAAGGCAAAAACCTCGACACCGATCCCCTTTGGGCCCTATCTGGCCAT
TGCTGGCTGGATTGCCTTGCTCTGGGGTGTTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.61	97.241	0.531
pilD	Vibrio campbellii strain DS40M4	53.546	97.241	0.521
pilD	Acinetobacter baumannii D1279779	45.645	98.966	0.452
pilD	Acinetobacter nosocomialis M2	45.645	98.966	0.452
pilD	Neisseria gonorrhoeae MS11	49.612	88.966	0.441