Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HZ99_RS14880 Genome accession   NZ_CP008896
Coordinates   3326871..3327608 (+) Length   245 a.a.
NCBI ID   WP_038443910.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain UK4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3321871..3332608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ99_RS14855 (HZ99_15220) bioD 3322198..3322878 (-) 681 WP_038443903.1 dethiobiotin synthase -
  HZ99_RS14860 (HZ99_15225) bioC 3322875..3323687 (-) 813 WP_038443904.1 malonyl-ACP O-methyltransferase BioC -
  HZ99_RS14865 (HZ99_15230) - 3323680..3324411 (-) 732 WP_038443906.1 alpha/beta fold hydrolase -
  HZ99_RS14870 (HZ99_15235) bioF 3324404..3325582 (-) 1179 WP_038443907.1 8-amino-7-oxononanoate synthase -
  HZ99_RS14875 (HZ99_15240) bioB 3325723..3326778 (-) 1056 WP_038443908.1 biotin synthase BioB -
  HZ99_RS14880 (HZ99_15245) comFC 3326871..3327608 (+) 738 WP_038443910.1 ComF family protein Machinery gene
  HZ99_RS14885 (HZ99_15250) - 3327674..3328438 (+) 765 WP_038443912.1 TOBE domain-containing protein -
  HZ99_RS14890 (HZ99_15255) - 3328615..3329589 (+) 975 WP_038443914.1 serine/threonine protein kinase -
  HZ99_RS14895 (HZ99_15260) rarD 3329768..3330652 (+) 885 WP_038443916.1 EamA family transporter RarD -
  HZ99_RS14900 (HZ99_15265) - 3330875..3331393 (-) 519 WP_038443918.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27395.87 Da        Isoelectric Point: 8.5020

>NTDB_id=110766 HZ99_RS14880 WP_038443910.1 3326871..3327608(+) (comFC) [Pseudomonas fluorescens strain UK4]
MHCQPERKRNVYIWLKSNQICLLCDEATDSPATICNACELDLPWLTDCCQVCALPLPASGLICGQCQRSPPAFQHVVAPW
TYGFPLDSLISRFKHQGKWPLGQMLASLLGQCLQDRFDNAELARPDRLLPVPMATKRLRQRGYNQAAMLARWLSRGLDLP
LEERLLLRPHDTIAQQQLDARQRQRNLLKAFALAPGVQVRGQHLALVDDVLTTGATAHSLARLLMDAGARQVDVYCLART
PKPGT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=110766 HZ99_RS14880 WP_038443910.1 3326871..3327608(+) (comFC) [Pseudomonas fluorescens strain UK4]
ATGCACTGTCAACCTGAGCGCAAACGCAACGTTTACATCTGGTTAAAAAGCAATCAAATCTGTTTGCTTTGTGATGAAGC
CACTGATTCCCCCGCTACCATCTGCAACGCCTGCGAACTAGACCTGCCCTGGCTGACGGACTGCTGCCAGGTGTGCGCCC
TGCCCTTGCCGGCCAGCGGTCTGATCTGCGGCCAATGCCAGCGCTCACCCCCGGCATTCCAGCACGTGGTGGCACCCTGG
ACCTATGGCTTTCCGCTGGACAGCCTGATCAGCCGCTTCAAGCACCAGGGCAAATGGCCCCTGGGACAGATGCTGGCAAG
CCTGCTGGGGCAATGCCTGCAAGACCGCTTCGACAATGCCGAACTGGCACGCCCCGACCGCCTGCTTCCCGTGCCGATGG
CCACCAAGCGCTTGCGCCAGCGCGGTTACAACCAGGCAGCCATGCTCGCCCGCTGGCTGAGCCGGGGCCTCGACCTGCCC
CTGGAGGAACGCCTGCTGCTGCGCCCCCATGACACCATCGCCCAGCAGCAACTGGACGCCAGGCAACGCCAGCGCAACCT
GCTCAAGGCCTTTGCCCTGGCACCCGGTGTGCAGGTCCGGGGCCAGCACCTGGCATTGGTGGACGATGTGCTGACCACCG
GCGCCACCGCCCACAGCCTGGCGCGCTTACTGATGGACGCCGGCGCGCGGCAGGTCGACGTGTATTGCCTGGCGCGCACG
CCCAAGCCCGGTACATGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

41.629

90.204

0.376

Multiple sequence alignment