Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACGJAX_RS01925 Genome accession   NZ_AP035776
Coordinates   404685..405902 (+) Length   405 a.a.
NCBI ID   WP_390957293.1    Uniprot ID   -
Organism   Pseudomonas moorei strain m318     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399685..410902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGJAX_RS01910 (PMm318_A03660) - 400039..402993 (+) 2955 WP_390957291.1 DUF748 domain-containing protein -
  ACGJAX_RS01915 (PMm318_A03670) - 403183..403536 (-) 354 WP_090325225.1 BON domain-containing protein -
  ACGJAX_RS01920 (PMm318_A03680) pilA 403845..404264 (-) 420 WP_390957292.1 pilin Machinery gene
  ACGJAX_RS01925 (PMm318_A03690) pilC 404685..405902 (+) 1218 WP_390957293.1 type II secretion system F family protein Machinery gene
  ACGJAX_RS01930 (PMm318_A03700) pilD 405904..406776 (+) 873 WP_248915556.1 A24 family peptidase Machinery gene
  ACGJAX_RS01935 (PMm318_A03710) coaE 406773..407396 (+) 624 WP_390957294.1 dephospho-CoA kinase -
  ACGJAX_RS01940 (PMm318_A03720) yacG 407393..407593 (+) 201 WP_248915558.1 DNA gyrase inhibitor YacG -
  ACGJAX_RS01945 (PMm318_A03730) - 407603..407818 (-) 216 WP_047533370.1 hypothetical protein -
  ACGJAX_RS01950 (PMm318_A03740) - 407882..408571 (-) 690 WP_247254694.1 energy-coupling factor ABC transporter permease -
  ACGJAX_RS01955 (PMm318_A03750) - 408568..409035 (-) 468 WP_390957295.1 FAD/FMN-containing dehydrogenase -
  ACGJAX_RS01960 (PMm318_A03760) - 409163..409789 (+) 627 WP_090325235.1 DUF1780 domain-containing protein -
  ACGJAX_RS01965 (PMm318_A03770) - 409786..410313 (+) 528 WP_390957296.1 MOSC domain-containing protein -
  ACGJAX_RS01970 (PMm318_A03780) - 410368..410541 (+) 174 WP_047533382.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44153.09 Da        Isoelectric Point: 10.2164

>NTDB_id=110765 ACGJAX_RS01925 WP_390957293.1 404685..405902(+) (pilC) [Pseudomonas moorei strain m318]
MAVKAAKISVYAWEGTDRKGARITGELSGQNPALIKAKLRKQGINPGKVRKKTPSLLSLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRTLVDDVKQDVAAGNSFAAALRKKPRYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKSKIKKAMTYPLMVVFVAIIVTGILLVKVVPQFQSVFQGFGAELPAFTVMVIGLSRFMQDSWWMMLGVTIVALFAIR
HALRTSQAFRDRMDTGLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVQRIRQDVSTGM
QLNFAMRTSGIFPNMAIQMTAIGEESGTLDGMLDKVAGFYEDDVDHMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=110765 ACGJAX_RS01925 WP_390957293.1 404685..405902(+) (pilC) [Pseudomonas moorei strain m318]
ATGGCGGTCAAAGCAGCAAAAATCAGTGTGTATGCCTGGGAAGGCACCGATCGCAAAGGTGCCCGAATAACCGGCGAGCT
GAGCGGACAGAACCCGGCGCTGATCAAGGCGAAATTGCGCAAGCAAGGCATCAATCCCGGTAAGGTCCGCAAGAAAACCC
CGTCGCTGCTCAGTCTGGGCAAACGCATCAAGGCCCAGGACATCGCCCTGTTCACCCGGCAAATGGCAACCATGATGAAA
GCCGGGGTGCCGTTACTGCAGTCGTTCGACATCATCGGTGAAGGCTTCGATAACCCGGCCATGCGCACGCTGGTGGACGA
CGTGAAACAGGACGTCGCGGCGGGTAACAGCTTTGCCGCGGCCCTGCGCAAAAAGCCCCGGTATTTCGATGAGTTGTACT
GCAATCTGGTGGACGCCGGCGAACAGGCCGGAGCGCTGGATACTCTGTTGGAACGGGTGGCGACTTATAAGGAAAAGAGC
GAAAGCCTCAAGTCCAAGATCAAGAAAGCCATGACCTACCCGCTGATGGTGGTGTTCGTCGCGATCATCGTCACCGGGAT
TCTTCTGGTCAAAGTGGTCCCGCAATTCCAGTCGGTATTCCAGGGATTCGGAGCCGAGTTGCCCGCCTTCACTGTGATGG
TCATTGGTTTGTCGCGGTTCATGCAGGACAGCTGGTGGATGATGCTCGGGGTCACGATCGTGGCGTTGTTCGCCATTCGT
CATGCCTTGAGGACGTCCCAGGCTTTTCGCGACCGAATGGACACCGGGTTGTTGAAACTGCCGCTGGTGGGCACCTTGAT
GTACAAATCCGCCGTGGCCCGCTTCGCCCGTACGCTGTCGACCACGTTCGCCGCTGGCGTGCCGTTGGTTGAAGCGCTGG
AGTCGGTGGCTGGCGCGACCGGCAATATCGTGTTCAAGCGCGCCGTGCAACGCATCAGGCAGGATGTCTCGACGGGCATG
CAGCTGAATTTCGCCATGCGTACTTCCGGTATCTTTCCGAACATGGCCATCCAGATGACCGCCATTGGCGAGGAGTCCGG
TACGCTGGACGGCATGCTCGACAAGGTCGCGGGTTTCTACGAGGACGACGTCGATCATATGGTCGATAACCTCACCAGCC
TGATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATCGTCGGTGGCCTGGTCGTCGCAATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

71.605

100

0.716
  pilC Acinetobacter baylyi ADP1

58.333

100

0.588
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

52.02

97.778

0.509
  pilG Neisseria meningitidis 44/76-A

42.752

100

0.43
  pilG Neisseria gonorrhoeae MS11

42.184

99.506

0.42
  pilC Vibrio cholerae strain A1552

42.145

99.012

0.417
  pilC Vibrio campbellii strain DS40M4

40.295

100

0.405
  pilC Thermus thermophilus HB27

37.717

99.506

0.375

Multiple sequence alignment