Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACGHCW_RS02990 | Genome accession | NZ_AP031614 |
| Coordinates | 602065..602523 (-) | Length | 152 a.a. |
| NCBI ID | WP_017189133.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain TUMSAT-2019 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 597065..607523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACGHCW_RS02970 (VHTUMSATKI_05060) | coaE | 597560..598174 (-) | 615 | WP_390502267.1 | dephospho-CoA kinase | - |
| ACGHCW_RS02975 (VHTUMSATKI_05070) | pilD | 598175..599044 (-) | 870 | WP_005446255.1 | A24 family peptidase | Machinery gene |
| ACGHCW_RS02980 (VHTUMSATKI_05080) | pilC | 599117..600340 (-) | 1224 | WP_005446256.1 | type II secretion system F family protein | Machinery gene |
| ACGHCW_RS02985 (VHTUMSATKI_05090) | pilB | 600374..602059 (-) | 1686 | WP_390502270.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACGHCW_RS02990 (VHTUMSATKI_05100) | pilA | 602065..602523 (-) | 459 | WP_017189133.1 | pilin | Machinery gene |
| ACGHCW_RS02995 (VHTUMSATKI_05110) | nadC | 602788..603675 (-) | 888 | WP_074050812.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACGHCW_RS03000 (VHTUMSATKI_05120) | ampD | 603768..604319 (+) | 552 | WP_390502271.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACGHCW_RS03005 (VHTUMSATKI_05130) | pdhR | 604724..605491 (+) | 768 | WP_009699648.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15777.93 Da Isoelectric Point: 7.7818
>NTDB_id=110666 ACGHCW_RS02990 WP_017189133.1 602065..602523(-) (pilA) [Vibrio harveyi strain TUMSAT-2019]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPDGSTANQTEAD
LGVPSTIPSGVIAFSTASSAGGTIKFTFNASGVSNLITSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQKYVAKSEVASALATLTGVKTNVEAYAVENGAFPDGSTANQTEAD
LGVPSTIPSGVIAFSTASSAGGTIKFTFNASGVSNLITSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
Nucleotide
Download Length: 459 bp
>NTDB_id=110666 ACGHCW_RS02990 WP_017189133.1 602065..602523(-) (pilA) [Vibrio harveyi strain TUMSAT-2019]
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCAATTCCTCAATATCAAAAATATGTAGCGAAATCAGAAGTCGCATCCGCATTAGCTACATTAACTGGTG
TAAAAACTAACGTTGAAGCTTACGCTGTAGAAAATGGCGCTTTTCCTGATGGTTCAACAGCAAACCAAACAGAAGCAGAT
CTAGGCGTACCGAGCACAATCCCTTCAGGTGTTATCGCATTTTCAACTGCTAGTTCAGCGGGTGGCACTATCAAGTTCAC
GTTCAATGCCTCAGGCGTAAGTAACCTCATCACTAGCAAAAACTTTGAATTGGTTCGTGCTTCTGATGGTACTTGGACAT
GTCAAGGCTCCTCAGCTAGCCCTGTTACAGACGATTTATTACCAAAAAACTGTCGCTAG
ATGAAAACGAATAAACAGAAGAAGCAGCAGGGTTTTACTCTAATTGAATTGATGATCGTGGTAGCGGTTATTGGTGTTTT
AGCAGCGATTGCAATTCCTCAATATCAAAAATATGTAGCGAAATCAGAAGTCGCATCCGCATTAGCTACATTAACTGGTG
TAAAAACTAACGTTGAAGCTTACGCTGTAGAAAATGGCGCTTTTCCTGATGGTTCAACAGCAAACCAAACAGAAGCAGAT
CTAGGCGTACCGAGCACAATCCCTTCAGGTGTTATCGCATTTTCAACTGCTAGTTCAGCGGGTGGCACTATCAAGTTCAC
GTTCAATGCCTCAGGCGTAAGTAACCTCATCACTAGCAAAAACTTTGAATTGGTTCGTGCTTCTGATGGTACTTGGACAT
GTCAAGGCTCCTCAGCTAGCCCTGTTACAGACGATTTATTACCAAAAAACTGTCGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
48.077 |
100 |
0.493 |
| pilA | Vibrio cholerae C6706 |
48.077 |
100 |
0.493 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.077 |
100 |
0.493 |
| pilA | Acinetobacter baumannii strain A118 |
46.528 |
94.737 |
0.441 |
| pilA | Pseudomonas aeruginosa PAK |
43.791 |
100 |
0.441 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
46.324 |
89.474 |
0.414 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
33.143 |
100 |
0.382 |
| pilE | Neisseria gonorrhoeae MS11 |
34.783 |
100 |
0.368 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.671 |
96.053 |
0.362 |