Detailed information NTG0110663

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACGHCW_RS02975
• Genome accession: NZ_AP031614
• Coordinates: 598175..599044 (-)
• Length: 289 a.a.
• NCBI ID: WP_005446255.1
• Uniprot ID: A0A3A1Q6Q3
• Organism: Vibrio harveyi strain TUMSAT-2019
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 593175..604044

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGHCW_RS02940 (VHTUMSATKI_05000)	rpsP	594255..594503 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
ACGHCW_RS02945 (VHTUMSATKI_05010)	rimM	594532..595080 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
ACGHCW_RS02950 (VHTUMSATKI_05020)	trmD	595108..595851 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACGHCW_RS02955 (VHTUMSATKI_05030)	rplS	595893..596246 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
ACGHCW_RS02960 (VHTUMSATKI_05040)	yacG	596535..596729 (-)	195	WP_005446249.1	DNA gyrase inhibitor YacG	-
ACGHCW_RS02965 (VHTUMSATKI_05050)	zapD	596792..597532 (-)	741	WP_005446251.1	cell division protein ZapD	-
ACGHCW_RS02970 (VHTUMSATKI_05060)	coaE	597560..598174 (-)	615	WP_390502267.1	dephospho-CoA kinase	-
ACGHCW_RS02975 (VHTUMSATKI_05070)	pilD	598175..599044 (-)	870	WP_005446255.1	A24 family peptidase	Machinery gene
ACGHCW_RS02980 (VHTUMSATKI_05080)	pilC	599117..600340 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
ACGHCW_RS02985 (VHTUMSATKI_05090)	pilB	600374..602059 (-)	1686	WP_390502270.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACGHCW_RS02990 (VHTUMSATKI_05100)	pilA	602065..602523 (-)	459	WP_017189133.1	pilin	Machinery gene
ACGHCW_RS02995 (VHTUMSATKI_05110)	nadC	602788..603675 (-)	888	WP_074050812.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32536.74 Da
• Isoelectric Point: 7.5422

>NTDB_id=110663 ACGHCW_RS02975 WP_005446255.1 598175..599044(-) (pilD) [Vibrio harveyi strain TUMSAT-2019]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=110663 ACGHCW_RS02975 WP_005446255.1 598175..599044(-) (pilD) [Vibrio harveyi strain TUMSAT-2019]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTCCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGCGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGTTGGGCTGGCAATCTCTGCCGATGATCATTTTGCTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAACTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCTTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A3A1Q6Q3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.232	100	0.972
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436