Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACMVYQ_RS07275 | Genome accession | NZ_CP180345 |
| Coordinates | 1401901..1402212 (+) | Length | 103 a.a. |
| NCBI ID | WP_029625707.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis strain YSMAA1_1_H3st | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1396901..1407212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMVYQ_RS07245 (ACMVYQ_07245) | - | 1397670..1397873 (+) | 204 | WP_002453337.1 | YqgQ family protein | - |
| ACMVYQ_RS07250 (ACMVYQ_07250) | - | 1397870..1398856 (+) | 987 | WP_002453336.1 | ROK family glucokinase | - |
| ACMVYQ_RS07255 (ACMVYQ_07255) | - | 1398856..1399182 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| ACMVYQ_RS07260 (ACMVYQ_07260) | - | 1399182..1399805 (+) | 624 | WP_002453335.1 | MBL fold metallo-hydrolase | - |
| ACMVYQ_RS07265 (ACMVYQ_07265) | comGA | 1399863..1400837 (+) | 975 | WP_002453334.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACMVYQ_RS07270 (ACMVYQ_07270) | comGB | 1400809..1401882 (+) | 1074 | WP_415429053.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACMVYQ_RS07275 (ACMVYQ_07275) | comGC | 1401901..1402212 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACMVYQ_RS07280 (ACMVYQ_07280) | comGD | 1402190..1402639 (+) | 450 | WP_121909863.1 | competence type IV pilus minor pilin ComGD | - |
| ACMVYQ_RS07285 (ACMVYQ_07285) | - | 1402626..1402925 (+) | 300 | WP_002453332.1 | hypothetical protein | - |
| ACMVYQ_RS07290 (ACMVYQ_07290) | comGF | 1402843..1403334 (+) | 492 | WP_165766541.1 | competence type IV pilus minor pilin ComGF | - |
| ACMVYQ_RS07295 (ACMVYQ_07295) | - | 1403504..1404013 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| ACMVYQ_RS07300 (ACMVYQ_07300) | gcvT | 1404222..1405313 (+) | 1092 | WP_016898186.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACMVYQ_RS07305 (ACMVYQ_07305) | gcvPA | 1405332..1406678 (+) | 1347 | WP_002453328.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11345.43 Da Isoelectric Point: 9.7122
>NTDB_id=1095381 ACMVYQ_RS07275 WP_029625707.1 1401901..1402212(+) (comGC) [Staphylococcus capitis strain YSMAA1_1_H3st]
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=1095381 ACMVYQ_RS07275 WP_029625707.1 1401901..1402212(+) (comGC) [Staphylococcus capitis strain YSMAA1_1_H3st]
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATAATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATAATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
86.408 |
100 |
0.864 |
| comGC | Staphylococcus aureus MW2 |
86.408 |
100 |
0.864 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.631 |
100 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
48.837 |
83.495 |
0.408 |
| comYC | Streptococcus mutans UA159 |
46.591 |
85.437 |
0.398 |
| comYC | Streptococcus mutans UA140 |
46.591 |
85.437 |
0.398 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
76.699 |
0.388 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |