Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ACMVYQ_RS07270 | Genome accession | NZ_CP180345 |
| Coordinates | 1400809..1401882 (+) | Length | 357 a.a. |
| NCBI ID | WP_415429053.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis strain YSMAA1_1_H3st | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1395809..1406882
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMVYQ_RS07240 (ACMVYQ_07240) | - | 1396227..1397689 (+) | 1463 | Protein_1347 | rhomboid family intramembrane serine protease | - |
| ACMVYQ_RS07245 (ACMVYQ_07245) | - | 1397670..1397873 (+) | 204 | WP_002453337.1 | YqgQ family protein | - |
| ACMVYQ_RS07250 (ACMVYQ_07250) | - | 1397870..1398856 (+) | 987 | WP_002453336.1 | ROK family glucokinase | - |
| ACMVYQ_RS07255 (ACMVYQ_07255) | - | 1398856..1399182 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| ACMVYQ_RS07260 (ACMVYQ_07260) | - | 1399182..1399805 (+) | 624 | WP_002453335.1 | MBL fold metallo-hydrolase | - |
| ACMVYQ_RS07265 (ACMVYQ_07265) | comGA | 1399863..1400837 (+) | 975 | WP_002453334.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACMVYQ_RS07270 (ACMVYQ_07270) | comGB | 1400809..1401882 (+) | 1074 | WP_415429053.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACMVYQ_RS07275 (ACMVYQ_07275) | comGC | 1401901..1402212 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACMVYQ_RS07280 (ACMVYQ_07280) | comGD | 1402190..1402639 (+) | 450 | WP_121909863.1 | competence type IV pilus minor pilin ComGD | - |
| ACMVYQ_RS07285 (ACMVYQ_07285) | - | 1402626..1402925 (+) | 300 | WP_002453332.1 | hypothetical protein | - |
| ACMVYQ_RS07290 (ACMVYQ_07290) | comGF | 1402843..1403334 (+) | 492 | WP_165766541.1 | competence type IV pilus minor pilin ComGF | - |
| ACMVYQ_RS07295 (ACMVYQ_07295) | - | 1403504..1404013 (+) | 510 | WP_029625706.1 | shikimate kinase | - |
| ACMVYQ_RS07300 (ACMVYQ_07300) | gcvT | 1404222..1405313 (+) | 1092 | WP_016898186.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACMVYQ_RS07305 (ACMVYQ_07305) | gcvPA | 1405332..1406678 (+) | 1347 | WP_002453328.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 42044.52 Da Isoelectric Point: 9.9584
>NTDB_id=1095380 ACMVYQ_RS07270 WP_415429053.1 1400809..1401882(+) (comGB) [Staphylococcus capitis strain YSMAA1_1_H3st]
MKRLLISILKPNRKKNLTEAQSIELLQRLKHLFEHGFTLYESFQFLNLHFIYRDKNISKIIIESIQAGGTCYEVLKMIGY
PEIILTQVKFAEQYGNLEVAMADAIEYMRRNLKAKKAFLKTIQYPIVLISIFLIMLIVLNMTVIPQFQQLYATMNVQLST
LQNILTVFITKLSAFVLLLTFCSIVIYIYIIIYKLLNKIPINKKIKYIVKIPFVNSYYKIFRTYQISNELSLFYKNGISL
QHIVHIYRNEQNNEFFKYLGDYLLKSIDKAMSLPSILNSLKCFQPDLIKFIEQGEKSGKLDIELKLYSQMLLHHFEDKVL
KQTKFIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
MKRLLISILKPNRKKNLTEAQSIELLQRLKHLFEHGFTLYESFQFLNLHFIYRDKNISKIIIESIQAGGTCYEVLKMIGY
PEIILTQVKFAEQYGNLEVAMADAIEYMRRNLKAKKAFLKTIQYPIVLISIFLIMLIVLNMTVIPQFQQLYATMNVQLST
LQNILTVFITKLSAFVLLLTFCSIVIYIYIIIYKLLNKIPINKKIKYIVKIPFVNSYYKIFRTYQISNELSLFYKNGISL
QHIVHIYRNEQNNEFFKYLGDYLLKSIDKAMSLPSILNSLKCFQPDLIKFIEQGEKSGKLDIELKLYSQMLLHHFEDKVL
KQTKFIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1074 bp
>NTDB_id=1095380 ACMVYQ_RS07270 WP_415429053.1 1400809..1401882(+) (comGB) [Staphylococcus capitis strain YSMAA1_1_H3st]
GTGAAGAGGTTGTTAATAAGTATACTTAAACCTAACAGAAAAAAGAATCTTACCGAAGCTCAATCCATTGAACTACTTCA
ACGACTAAAACATTTATTTGAACATGGATTCACATTGTATGAAAGCTTTCAATTTCTAAATTTACACTTTATTTATAGAG
ATAAAAACATTAGTAAAATAATAATAGAATCTATTCAAGCAGGTGGAACATGTTATGAAGTATTGAAGATGATTGGTTAC
CCCGAAATTATACTTACTCAAGTAAAATTTGCAGAACAGTATGGAAATTTAGAAGTTGCAATGGCAGACGCCATTGAATA
TATGAGAAGAAACTTGAAGGCTAAAAAGGCATTCCTAAAAACTATTCAATATCCAATAGTGCTGATAAGTATATTTCTAA
TCATGCTAATCGTGTTAAATATGACTGTTATACCTCAATTTCAACAATTATACGCGACTATGAATGTTCAACTATCTACT
TTACAAAATATACTTACCGTTTTCATTACAAAGTTGTCTGCTTTTGTATTATTGCTTACTTTTTGTTCAATTGTGATATA
TATATATATAATTATTTATAAACTCCTAAACAAAATTCCCATAAATAAAAAAATAAAATATATAGTTAAAATCCCCTTTG
TCAATTCTTACTATAAAATATTCAGAACTTATCAAATATCTAATGAACTTTCTCTTTTTTATAAAAACGGTATAAGCCTT
CAACATATTGTTCATATATATAGAAATGAGCAAAACAATGAATTTTTTAAATATTTAGGTGACTACTTATTAAAAAGTAT
TGATAAAGCGATGTCACTACCGTCTATATTAAATAGCTTAAAATGCTTTCAACCTGATCTAATCAAATTTATTGAGCAAG
GGGAAAAAAGCGGAAAACTAGATATTGAATTAAAGTTATATAGCCAAATGTTACTACATCATTTTGAAGATAAAGTTCTC
AAGCAAACTAAATTTATTCAACCAGTCATTTTCTTTATATTAGGTCTATTTATAGTTTCTTTATATCTTGTAATCATGTT
ACCTATGTTTGAACTAATGCAAACCATCAAATAG
GTGAAGAGGTTGTTAATAAGTATACTTAAACCTAACAGAAAAAAGAATCTTACCGAAGCTCAATCCATTGAACTACTTCA
ACGACTAAAACATTTATTTGAACATGGATTCACATTGTATGAAAGCTTTCAATTTCTAAATTTACACTTTATTTATAGAG
ATAAAAACATTAGTAAAATAATAATAGAATCTATTCAAGCAGGTGGAACATGTTATGAAGTATTGAAGATGATTGGTTAC
CCCGAAATTATACTTACTCAAGTAAAATTTGCAGAACAGTATGGAAATTTAGAAGTTGCAATGGCAGACGCCATTGAATA
TATGAGAAGAAACTTGAAGGCTAAAAAGGCATTCCTAAAAACTATTCAATATCCAATAGTGCTGATAAGTATATTTCTAA
TCATGCTAATCGTGTTAAATATGACTGTTATACCTCAATTTCAACAATTATACGCGACTATGAATGTTCAACTATCTACT
TTACAAAATATACTTACCGTTTTCATTACAAAGTTGTCTGCTTTTGTATTATTGCTTACTTTTTGTTCAATTGTGATATA
TATATATATAATTATTTATAAACTCCTAAACAAAATTCCCATAAATAAAAAAATAAAATATATAGTTAAAATCCCCTTTG
TCAATTCTTACTATAAAATATTCAGAACTTATCAAATATCTAATGAACTTTCTCTTTTTTATAAAAACGGTATAAGCCTT
CAACATATTGTTCATATATATAGAAATGAGCAAAACAATGAATTTTTTAAATATTTAGGTGACTACTTATTAAAAAGTAT
TGATAAAGCGATGTCACTACCGTCTATATTAAATAGCTTAAAATGCTTTCAACCTGATCTAATCAAATTTATTGAGCAAG
GGGAAAAAAGCGGAAAACTAGATATTGAATTAAAGTTATATAGCCAAATGTTACTACATCATTTTGAAGATAAAGTTCTC
AAGCAAACTAAATTTATTCAACCAGTCATTTTCTTTATATTAGGTCTATTTATAGTTTCTTTATATCTTGTAATCATGTT
ACCTATGTTTGAACTAATGCAAACCATCAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.856 |
97.199 |
0.485 |
| comGB | Staphylococcus aureus N315 |
49.856 |
97.199 |
0.485 |