Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACLB90_RS05230 Genome accession   NZ_CP177163
Coordinates   1244500..1245759 (+) Length   419 a.a.
NCBI ID   WP_411851931.1    Uniprot ID   -
Organism   Stenotrophomonas sp. LGBM10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1239500..1250759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLB90_RS05210 (ACLB90_05210) pilB 1239711..1241441 (-) 1731 WP_411851927.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLB90_RS05215 (ACLB90_05215) - 1241526..1242398 (-) 873 WP_411851928.1 serine hydrolase domain-containing protein -
  ACLB90_RS05220 (ACLB90_05220) - 1242425..1243414 (-) 990 WP_411851929.1 methyltransferase family protein -
  ACLB90_RS05225 (ACLB90_05225) pilA2 1243701..1244138 (-) 438 WP_411851930.1 pilin Machinery gene
  ACLB90_RS05230 (ACLB90_05230) pilC 1244500..1245759 (+) 1260 WP_411851931.1 type II secretion system F family protein Machinery gene
  ACLB90_RS05235 (ACLB90_05235) pilD 1245767..1246630 (+) 864 WP_017356176.1 prepilin peptidase Machinery gene
  ACLB90_RS05240 (ACLB90_05240) coaE 1246641..1247258 (+) 618 WP_411851932.1 dephospho-CoA kinase -
  ACLB90_RS05245 (ACLB90_05245) - 1247278..1248609 (-) 1332 WP_411851933.1 sensor histidine kinase -
  ACLB90_RS05250 (ACLB90_05250) - 1248614..1249291 (-) 678 WP_017356179.1 response regulator transcription factor -
  ACLB90_RS05255 (ACLB90_05255) - 1249300..1249764 (-) 465 WP_411852702.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45851.30 Da        Isoelectric Point: 9.9091

>NTDB_id=1085705 ACLB90_RS05230 WP_411851931.1 1244500..1245759(+) (pilC) [Stenotrophomonas sp. LGBM10]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGIKMKGEQIAKNANMLRAELRRQGITPGVVKVKPKPLFGAAGSPVTPKD
IAFFSRQMATMMKSGVPIVSALEIIASGHKNPRMKKLVDTVRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIETLKGKIKKAMFYPAMVVAVAIIVSSILLIWVVPMFEDVFKSFGADLPAFTQMIVMCSRFMVSWWLL
LALIAGGSIFGFLYAYRRSPSMQHTMDRLILKVPVIGEIMNNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNVFPHMVIQMTAIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1085705 ACLB90_RS05230 WP_411851931.1 1244500..1245759(+) (pilC) [Stenotrophomonas sp. LGBM10]
ATGTCTGTGAGCCGTAGCGCGATCAAGAAAGAGCCCGTGGCGCGAAGCACCATGGAGCTGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGCGGCATCAAGATGAAAGGCGAGCAGATCGCCAAGAATGCGAACATGCTGCGCGCCGAGCTGCGCCGCC
AGGGAATCACGCCCGGGGTGGTGAAGGTCAAGCCGAAGCCGCTGTTCGGCGCGGCGGGCAGCCCCGTCACGCCCAAGGAC
ATCGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCGATCGTGAGCGCCCTGGAGATCATTGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGCTGGTCGACACGGTGCGCACCGATATCGAGGGCGGTTCGTCGCTGCACGAGG
CGATCAGCAAGCACCCGGTCCAGTTCGACGAGCTGTACCGCAACCTGGTCCGCGCCGGTGAAGGCGCCGGTGTGCTGGAA
ACCGTGCTCGACACGGTCGCCACCTATAAAGAGAACATCGAAACCCTCAAGGGCAAGATCAAAAAGGCGATGTTCTACCC
GGCGATGGTCGTCGCCGTGGCGATCATCGTCAGTTCGATCCTGCTGATCTGGGTCGTGCCGATGTTCGAGGACGTCTTCA
AGAGCTTCGGTGCGGACCTGCCCGCCTTCACCCAGATGATCGTGATGTGTTCACGCTTCATGGTGTCGTGGTGGTTGTTG
CTGGCACTGATTGCAGGCGGCAGCATCTTCGGCTTCCTGTATGCCTATCGGCGCTCCCCGTCCATGCAGCACACGATGGA
TCGCCTGATCCTGAAGGTGCCGGTGATCGGCGAAATCATGAACAACAGCGCCATCGCCCGCTTCTCGCGGACCACGGCAG
TGACCTTCAAGGCCGGCGTGCCGCTGGTCGAGGCGCTGGGCATCGTAGCCGGCGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTGCTGCGCATGCGCGACGACGTCTCGGTGGGCTACCCGGTCAACATGGCGATGAAGCAGGTCAATGTCTTCCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGCGCGCTGGATACCATGCTGTTCAAGGTCGCCGAGTACTATG
AGCAGGAGGTCAACAACGCCGTGGATGCCCTGAGCAGCCTGTTGGAACCGATGATCATGGTATTCATTGGTACCATCGTC
GGTGGCATGGTGATCGGTATGTACCTGCCCATCTTCAAACTCGGCGCGGTTGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.463

96.897

0.508
  pilC Pseudomonas stutzeri DSM 10701

51.716

97.375

0.504
  pilC Legionella pneumophila strain ERS1305867

52.381

95.227

0.499
  pilC Acinetobacter baumannii D1279779

51.637

94.749

0.489
  pilG Neisseria gonorrhoeae MS11

43.75

95.465

0.418
  pilG Neisseria meningitidis 44/76-A

43.25

95.465

0.413
  pilC Vibrio campbellii strain DS40M4

40.64

96.897

0.394
  pilC Vibrio cholerae strain A1552

40.394

96.897

0.391
  pilC Thermus thermophilus HB27

39.196

94.988

0.372

Multiple sequence alignment