Detailed information NTG1085706

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLB90_RS05235
• Genome accession: NZ_CP177163
• Coordinates: 1245767..1246630 (+)
• Length: 287 a.a.
• NCBI ID: WP_017356176.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. LGBM10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1240767..1251630

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLB90_RS05215 (ACLB90_05215)	-	1241526..1242398 (-)	873	WP_411851928.1	serine hydrolase domain-containing protein	-
ACLB90_RS05220 (ACLB90_05220)	-	1242425..1243414 (-)	990	WP_411851929.1	methyltransferase family protein	-
ACLB90_RS05225 (ACLB90_05225)	pilA2	1243701..1244138 (-)	438	WP_411851930.1	pilin	Machinery gene
ACLB90_RS05230 (ACLB90_05230)	pilC	1244500..1245759 (+)	1260	WP_411851931.1	type II secretion system F family protein	Machinery gene
ACLB90_RS05235 (ACLB90_05235)	pilD	1245767..1246630 (+)	864	WP_017356176.1	prepilin peptidase	Machinery gene
ACLB90_RS05240 (ACLB90_05240)	coaE	1246641..1247258 (+)	618	WP_411851932.1	dephospho-CoA kinase	-
ACLB90_RS05245 (ACLB90_05245)	-	1247278..1248609 (-)	1332	WP_411851933.1	sensor histidine kinase	-
ACLB90_RS05250 (ACLB90_05250)	-	1248614..1249291 (-)	678	WP_017356179.1	response regulator transcription factor	-
ACLB90_RS05255 (ACLB90_05255)	-	1249300..1249764 (-)	465	WP_411852702.1	hypothetical protein	-
ACLB90_RS05260 (ACLB90_05260)	rimK	1250003..1250896 (-)	894	WP_411851934.1	30S ribosomal protein S6--L-glutamate ligase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31750.59 Da
• Isoelectric Point: 8.2404

>NTDB_id=1085706 ACLB90_RS05235 WP_017356176.1 1245767..1246630(+) (pilD) [Stenotrophomonas sp. LGBM10]
MAFLDQHPGLGFPAAAGLGLLLGSFLNVVILRLPKRLDWQWKRDAREVLEEPDIYEPPPPGIVVEPSHCPHCKHKLAWYE
NIPLFSWLVQRGKCRHCHAPISIQYPLVEALTALLVVASVWQFGFGWQGFGAIVLTCFLITLSGIDLRTQLLPDQLTLPL
MWLGLIAASDNLYMPAKPALLGALAGYLSLWSVWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILLSSVVGAII
GSIWLYSRGRDRASPIPFGPYLAIAGWIVFFWGEPLINGYLSYAGLR

Nucleotide

• Length: 864 bp

>NTDB_id=1085706 ACLB90_RS05235 WP_017356176.1 1245767..1246630(+) (pilD) [Stenotrophomonas sp. LGBM10]
ATGGCATTTCTTGACCAGCATCCCGGTCTCGGCTTTCCCGCCGCGGCCGGTCTGGGGCTGCTTCTGGGCAGCTTCCTCAA
TGTAGTGATCCTGCGCCTGCCCAAGCGGCTGGACTGGCAGTGGAAGCGCGACGCCCGCGAAGTGCTGGAAGAGCCGGACA
TCTACGAGCCGCCACCGCCGGGGATCGTGGTGGAGCCGTCGCACTGCCCGCACTGCAAGCACAAGCTGGCCTGGTACGAG
AACATCCCCCTGTTCAGCTGGCTGGTCCAGCGCGGCAAGTGCCGCCATTGCCACGCCCCGATCTCGATCCAGTACCCGCT
GGTGGAGGCGCTGACCGCGCTGCTGGTGGTCGCCAGCGTCTGGCAGTTCGGGTTCGGCTGGCAGGGCTTCGGCGCGATCG
TGCTGACCTGCTTCCTGATCACCCTCTCGGGCATCGACCTGCGCACCCAGCTGCTGCCGGACCAGTTGACCCTGCCCTTG
ATGTGGCTGGGCCTGATCGCCGCGAGCGACAACCTGTACATGCCGGCCAAGCCGGCGCTGCTCGGCGCGCTGGCCGGCTA
CCTGTCGCTGTGGTCGGTGTGGTGGCTGTTCAAGCAGCTTACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGC
TGGCGGCACTGGGCGCGTGGTGCGGGCTCAAGGGCATTCTGCCGATCATCCTGCTGTCGTCGGTGGTGGGCGCGATCATC
GGGTCGATCTGGCTGTATTCGCGTGGCCGCGACCGCGCAAGCCCGATTCCGTTCGGGCCGTACCTGGCCATCGCCGGCTG
GATCGTGTTCTTTTGGGGCGAGCCGTTGATCAACGGCTACCTGAGCTACGCCGGCCTGCGTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (133-241)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	48.421	99.303	0.481
pilD	Vibrio cholerae strain A1552	49.635	95.47	0.474
pilD	Acinetobacter baumannii D1279779	47.872	98.258	0.47
pilD	Acinetobacter nosocomialis M2	47.872	98.258	0.47
pilD	Neisseria gonorrhoeae MS11	45.387	94.425	0.429