Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GEV1001_RS08125 | Genome accession | NZ_CP173422 |
| Coordinates | 1891749..1892177 (-) | Length | 142 a.a. |
| NCBI ID | WP_011348339.1 | Uniprot ID | Q3BQ79 |
| Organism | Xanthomonas perforans strain GEV1001 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1886749..1897177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEV1001_RS08115 | pilR | 1888273..1889667 (+) | 1395 | WP_046931914.1 | sigma-54 dependent transcriptional regulator | Regulator |
| GEV1001_RS08120 | pilB | 1889882..1891591 (-) | 1710 | WP_039416953.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GEV1001_RS08125 | pilA | 1891749..1892177 (-) | 429 | WP_011348339.1 | pilin | Machinery gene |
| GEV1001_RS08130 | pilC | 1892519..1893781 (+) | 1263 | WP_011348340.1 | type II secretion system F family protein | Machinery gene |
| GEV1001_RS08135 | - | 1893788..1894651 (+) | 864 | WP_008576868.1 | A24 family peptidase | - |
| GEV1001_RS08140 | coaE | 1894665..1895276 (+) | 612 | WP_011348341.1 | dephospho-CoA kinase | - |
| GEV1001_RS08145 | - | 1895458..1896498 (+) | 1041 | WP_011348342.1 | RHS repeat domain-containing protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14343.43 Da Isoelectric Point: 9.1206
>NTDB_id=1072213 GEV1001_RS08125 WP_011348339.1 1891749..1892177(-) (pilA) [Xanthomonas perforans strain GEV1001]
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
MKKQNGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTATNNVASVA
VAAATGNITVTTTDKAGGGTIIFAPTANGAALTSGTVPTDRISWDCKGGTLVAKYRPAECRT
Nucleotide
Download Length: 429 bp
>NTDB_id=1072213 GEV1001_RS08125 WP_011348339.1 1891749..1892177(-) (pilA) [Xanthomonas perforans strain GEV1001]
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA
ATGAAGAAGCAAAACGGCTTTACCCTTATCGAACTGATGATCGTTGTCGCGATCATCGCAATCCTTGCCGCCATCGCGTT
GCCGGCCTACCAGGACTACACCGTTCGCGGCCGCGTCTCTGAAGCGATGGTTGCCGCGTCTGCCGCCAAGACGGTGGTGG
CCGAAAATGCCGCCAACGGCTCTGCCCTGAATAGCGGGTGGACCGCTCCTACGGCGACCAATAATGTTGCCAGCGTAGCC
GTTGCTGCCGCTACGGGCAATATTACTGTGACCACTACCGATAAGGCCGGCGGCGGCACGATCATTTTTGCTCCCACCGC
TAACGGCGCTGCGCTGACTTCCGGCACCGTTCCTACCGATCGCATTTCGTGGGATTGCAAGGGTGGCACCTTGGTTGCCA
AGTACCGTCCGGCTGAATGCCGTACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.572 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
54.795 |
100 |
0.563 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.795 |
100 |
0.563 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.894 |
100 |
0.528 |
| comP | Acinetobacter baylyi ADP1 |
47.468 |
100 |
0.528 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.096 |
100 |
0.423 |
| pilA | Acinetobacter baumannii strain A118 |
39.716 |
99.296 |
0.394 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.571 |
98.592 |
0.38 |
| pilA | Vibrio cholerae C6706 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae strain A1552 |
33.766 |
100 |
0.366 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
33.766 |
100 |
0.366 |