Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GEV1001_RS08115 Genome accession   NZ_CP173422
Coordinates   1888273..1889667 (+) Length   464 a.a.
NCBI ID   WP_046931914.1    Uniprot ID   A0AAQ0YVV6
Organism   Xanthomonas perforans strain GEV1001     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883273..1894667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV1001_RS08095 - 1883517..1883861 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  GEV1001_RS08100 sucD 1884032..1884907 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  GEV1001_RS08105 sucC 1884932..1886101 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  GEV1001_RS08110 - 1886333..1887946 (+) 1614 WP_031423866.1 PAS domain-containing sensor histidine kinase -
  GEV1001_RS08115 pilR 1888273..1889667 (+) 1395 WP_046931914.1 sigma-54 dependent transcriptional regulator Regulator
  GEV1001_RS08120 pilB 1889882..1891591 (-) 1710 WP_039416953.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GEV1001_RS08125 pilA 1891749..1892177 (-) 429 WP_011348339.1 pilin Machinery gene
  GEV1001_RS08130 pilC 1892519..1893781 (+) 1263 WP_011348340.1 type II secretion system F family protein Machinery gene
  GEV1001_RS08135 - 1893788..1894651 (+) 864 WP_008576868.1 A24 family peptidase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50166.56 Da        Isoelectric Point: 6.5718

>NTDB_id=1072211 GEV1001_RS08115 WP_046931914.1 1888273..1889667(+) (pilR) [Xanthomonas perforans strain GEV1001]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAVPNGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1072211 GEV1001_RS08115 WP_046931914.1 1888273..1889667(+) (pilR) [Xanthomonas perforans strain GEV1001]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCTTGCGCATCAGCACCGCGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACACCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTGCTGCGCGGTCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGA
CGCATTGAATCACTACGGCTTCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCTAACGGAGGTGCCGCG
GCCGAACCGCGCGAAGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAATTGGAGCGCGC
CGCGATTCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGC
TGCGTTACAAGTTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment