Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   ACIVIR_RS00850 Genome accession   NZ_CP173225
Coordinates   136214..137155 (-) Length   313 a.a.
NCBI ID   WP_000249549.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 262     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 131214..142155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVIR_RS00810 comYH 131700..132653 (-) 954 WP_050308921.1 class I SAM-dependent methyltransferase Machinery gene
  ACIVIR_RS00815 - 132714..133308 (-) 595 Protein_133 class I SAM-dependent methyltransferase -
  ACIVIR_RS00820 comGG/cglG 133445..133858 (-) 414 WP_050102600.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACIVIR_RS00825 comGF/cglF 133836..134297 (-) 462 WP_000250544.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACIVIR_RS00830 comGE/cglE 134260..134562 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACIVIR_RS00835 comGD/cglD 134525..134929 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACIVIR_RS00840 comGC/cglC 134922..135248 (-) 327 WP_000738632.1 comG operon protein ComGC Machinery gene
  ACIVIR_RS00845 comGB/cglB 135250..136266 (-) 1017 WP_114880773.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACIVIR_RS00850 comGA/cglA/cilD 136214..137155 (-) 942 WP_000249549.1 competence type IV pilus ATPase ComGA Machinery gene
  ACIVIR_RS00855 - 137231..137596 (-) 366 WP_000286415.1 DUF1033 family protein -
  ACIVIR_RS00860 - 137747..138805 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  ACIVIR_RS00865 nagA 138968..140119 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -
  ACIVIR_RS00870 - 140272..142089 (-) 1818 WP_001220922.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35543.45 Da        Isoelectric Point: 6.0083

>NTDB_id=1070780 ACIVIR_RS00850 WP_000249549.1 136214..137155(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain 262]
MVQEIAQEIIRSARKKGAQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYA
YDQKIASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQ
VMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIRGVY
ERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFANRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1070780 ACIVIR_RS00850 WP_000249549.1 136214..137155(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain 262]
ATGGTTCAAGAAATTGCACAAGAAATCATTCGTTCGGCTCGGAAAAAAGGGGCGCAAGACATTTATTTTGTCCCTAAGTT
AGATGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGCTGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCG
TTATCAGTCACTTTAAGTTTGTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
TATGACCAGAAGATAGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGGCATGAGAGTTTGGTTATCCGTTTGTT
GCACGATGAGGAGCAGGACTTGCATTTTTGGTTTCAGGATATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGACTCT
ATCTTTTTGCTGGTCCGGTTGGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTGAACGAAGCAATCGGCCTAAC
CTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCAGATCTCTTGATTATCGGAGAAATTCGTGACAGCGAGACGG
CGCGTGCAGTGGTCAGAGCTAGTTTGACAGGTGCGACAGTCTTTTCAACCATTCACGCCAAGAGTATCCGAGGTGTTTAT
GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTCTGCAAGGAGTCTGCTACCAGAGATTAATCGG
GGGAGGAGGAATCGTTGACTTTGCAAACAGAGATTATCAAGAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGC
TTCTTAAAGATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae D39

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae R6

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

99.042

100

0.99
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

96.805

100

0.968
  comYA Streptococcus gordonii str. Challis substr. CH1

78.065

99.042

0.773
  comYA Streptococcus mutans UA159

66.238

99.361

0.658
  comYA Streptococcus mutans UA140

66.238

99.361

0.658
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.903

99.042

0.623
  comGA Lactococcus lactis subsp. cremoris KW2

55.128

99.681

0.55
  comGA Latilactobacillus sakei subsp. sakei 23K

41.912

86.901

0.364

Multiple sequence alignment