Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ACIVIR_RS00820 Genome accession   NZ_CP173225
Coordinates   133445..133858 (-) Length   137 a.a.
NCBI ID   WP_050102600.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 262     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 128445..138858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVIR_RS00790 - 129140..129964 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  ACIVIR_RS00795 rnpA 129939..130310 (-) 372 WP_000739246.1 ribonuclease P protein component -
  ACIVIR_RS00800 - 130327..130458 (-) 132 WP_000768904.1 hypothetical protein -
  ACIVIR_RS00805 - 130459..131649 (-) 1191 WP_000167766.1 acetate kinase -
  ACIVIR_RS00810 comYH 131700..132653 (-) 954 WP_050308921.1 class I SAM-dependent methyltransferase Machinery gene
  ACIVIR_RS00815 - 132714..133308 (-) 595 Protein_133 class I SAM-dependent methyltransferase -
  ACIVIR_RS00820 comGG/cglG 133445..133858 (-) 414 WP_050102600.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACIVIR_RS00825 comGF/cglF 133836..134297 (-) 462 WP_000250544.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACIVIR_RS00830 comGE/cglE 134260..134562 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACIVIR_RS00835 comGD/cglD 134525..134929 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACIVIR_RS00840 comGC/cglC 134922..135248 (-) 327 WP_000738632.1 comG operon protein ComGC Machinery gene
  ACIVIR_RS00845 comGB/cglB 135250..136266 (-) 1017 WP_114880773.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACIVIR_RS00850 comGA/cglA/cilD 136214..137155 (-) 942 WP_000249549.1 competence type IV pilus ATPase ComGA Machinery gene
  ACIVIR_RS00855 - 137231..137596 (-) 366 WP_000286415.1 DUF1033 family protein -
  ACIVIR_RS00860 - 137747..138805 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15920.34 Da        Isoelectric Point: 10.1695

>NTDB_id=1070774 ACIVIR_RS00820 WP_050102600.1 133445..133858(-) (comGG/cglG) [Streptococcus pneumoniae strain 262]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1070774 ACIVIR_RS00820 WP_050102600.1 133445..133858(-) (comGG/cglG) [Streptococcus pneumoniae strain 262]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGGATAAGAGTCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae D39

96.35

100

0.964

  comGG/cglG Streptococcus pneumoniae R6

96.35

100

0.964

  comGG/cglG Streptococcus pneumoniae TIGR4

96.35

100

0.964

  comGG/cglG Streptococcus pneumoniae Rx1

96.35

100

0.964

  comGG/cglG Streptococcus mitis SK321

86.131

100

0.861

  comGG/cglG Streptococcus mitis NCTC 12261

90.909

88.321

0.803

  comYG Streptococcus mutans UA140

40.299

97.81

0.394

  comYG Streptococcus mutans UA159

40.299

97.81

0.394


Multiple sequence alignment