Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BCS84_RS04235 | Genome accession | NZ_CP170046 |
| Coordinates | 854740..855150 (-) | Length | 136 a.a. |
| NCBI ID | WP_016793485.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.222.45.E8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 849740..860150
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCS84_RS04215 (BCS84_04215) | coaE | 850253..850867 (-) | 615 | WP_016793489.1 | dephospho-CoA kinase | - |
| BCS84_RS04220 (BCS84_04220) | pilD | 850870..851739 (-) | 870 | WP_016793488.1 | prepilin peptidase | Machinery gene |
| BCS84_RS04225 (BCS84_04225) | pilC | 851806..853035 (-) | 1230 | WP_016793487.1 | type II secretion system F family protein | Machinery gene |
| BCS84_RS04230 (BCS84_04230) | pilB | 853050..854738 (-) | 1689 | WP_016793486.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BCS84_RS04235 (BCS84_04235) | pilA | 854740..855150 (-) | 411 | WP_016793485.1 | pilin | Machinery gene |
| BCS84_RS04240 (BCS84_04240) | nadC | 855402..856292 (-) | 891 | WP_016768207.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| BCS84_RS04245 (BCS84_04245) | ampD | 856376..856975 (+) | 600 | WP_016791286.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BCS84_RS04250 (BCS84_04250) | pdhR | 857457..858218 (+) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 13841.72 Da Isoelectric Point: 4.9813
>NTDB_id=1054929 BCS84_RS04235 WP_016793485.1 854740..855150(-) (pilA) [Vibrio cyclitrophicus strain 10N.222.45.E8]
MNNKSKRTNQKGFTLIELMIVVAIIGALSAIAVPAYKDYVSKSQASSALATLKALITPAELLIQEEGSISGGVSALGISA
SSNTLGTISASGTTISFSFVDGSLDGDSMTMRRSADTGWSCSLSASSAIPSIEGCN
MNNKSKRTNQKGFTLIELMIVVAIIGALSAIAVPAYKDYVSKSQASSALATLKALITPAELLIQEEGSISGGVSALGISA
SSNTLGTISASGTTISFSFVDGSLDGDSMTMRRSADTGWSCSLSASSAIPSIEGCN
Nucleotide
Download Length: 411 bp
>NTDB_id=1054929 BCS84_RS04235 WP_016793485.1 854740..855150(-) (pilA) [Vibrio cyclitrophicus strain 10N.222.45.E8]
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGTTGATTGAATTGATGATTGTGGTGGCAATTATTGGTGC
TTTATCAGCGATCGCTGTACCTGCATATAAAGACTATGTATCCAAAAGCCAAGCATCTTCTGCATTAGCAACACTAAAAG
CACTAATTACACCAGCTGAATTATTAATCCAAGAGGAAGGCAGCATTAGTGGCGGCGTTAGTGCGTTGGGGATTTCAGCT
AGCTCAAACACTTTAGGGACTATCTCAGCTTCAGGCACTACCATTTCATTTTCGTTTGTAGACGGTAGCCTTGATGGTGA
CAGTATGACTATGAGAAGGAGTGCGGATACTGGTTGGTCATGTTCACTATCAGCCTCAAGCGCAATCCCTTCAATAGAAG
GTTGCAACTAA
ATGAATAACAAAAGTAAAAGAACAAATCAGAAAGGCTTTACGTTGATTGAATTGATGATTGTGGTGGCAATTATTGGTGC
TTTATCAGCGATCGCTGTACCTGCATATAAAGACTATGTATCCAAAAGCCAAGCATCTTCTGCATTAGCAACACTAAAAG
CACTAATTACACCAGCTGAATTATTAATCCAAGAGGAAGGCAGCATTAGTGGCGGCGTTAGTGCGTTGGGGATTTCAGCT
AGCTCAAACACTTTAGGGACTATCTCAGCTTCAGGCACTACCATTTCATTTTCGTTTGTAGACGGTAGCCTTGATGGTGA
CAGTATGACTATGAGAAGGAGTGCGGATACTGGTTGGTCATGTTCACTATCAGCCTCAAGCGCAATCCCTTCAATAGAAG
GTTGCAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
49.286 |
100 |
0.507 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.31 |
100 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
39.31 |
100 |
0.419 |
| pilA | Vibrio cholerae C6706 |
39.31 |
100 |
0.419 |
| pilA | Pseudomonas aeruginosa PAK |
42.105 |
97.794 |
0.412 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.353 |
97.794 |
0.404 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.221 |
96.324 |
0.397 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.232 |
100 |
0.368 |