Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BCS84_RS04225 Genome accession   NZ_CP170046
Coordinates   851806..853035 (-) Length   409 a.a.
NCBI ID   WP_016793487.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.222.45.E8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 846806..858035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCS84_RS04185 (BCS84_04185) rpsP 846897..847145 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  BCS84_RS04190 (BCS84_04190) rimM 847170..847724 (+) 555 WP_016768202.1 ribosome maturation factor RimM -
  BCS84_RS04195 (BCS84_04195) trmD 847751..848491 (+) 741 WP_010435912.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BCS84_RS04200 (BCS84_04200) rplS 848551..848904 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  BCS84_RS04205 (BCS84_04205) yacG 849207..849404 (-) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  BCS84_RS04210 (BCS84_04210) zapD 849486..850226 (-) 741 WP_010435917.1 cell division protein ZapD -
  BCS84_RS04215 (BCS84_04215) coaE 850253..850867 (-) 615 WP_016793489.1 dephospho-CoA kinase -
  BCS84_RS04220 (BCS84_04220) pilD 850870..851739 (-) 870 WP_016793488.1 prepilin peptidase Machinery gene
  BCS84_RS04225 (BCS84_04225) pilC 851806..853035 (-) 1230 WP_016793487.1 type II secretion system F family protein Machinery gene
  BCS84_RS04230 (BCS84_04230) pilB 853050..854738 (-) 1689 WP_016793486.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BCS84_RS04235 (BCS84_04235) pilA 854740..855150 (-) 411 WP_016793485.1 pilin Machinery gene
  BCS84_RS04240 (BCS84_04240) nadC 855402..856292 (-) 891 WP_016768207.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BCS84_RS04245 (BCS84_04245) ampD 856376..856975 (+) 600 WP_016791286.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45190.12 Da        Isoelectric Point: 10.1000

>NTDB_id=1054927 BCS84_RS04225 WP_016793487.1 851806..853035(-) (pilC) [Vibrio cyclitrophicus strain 10N.222.45.E8]
MSSKSKQSQLKNYHWKGINSSGKKVSGQSLALTELEVREKLKEQHIQIKKIKKKSISAITRITHRVKAKDITVLTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATTL
VVHQLCQRSYSIRLSASRLVLRFPVLGSVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1054927 BCS84_RS04225 WP_016793487.1 851806..853035(-) (pilC) [Vibrio cyclitrophicus strain 10N.222.45.E8]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGTAAGAAAGTGTCTGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGAGAGAAGCTCAAAGAGCAGCATATCCAAATTAAGAAAATCAAAAAGA
AAAGTATCTCCGCAATCACTCGCATAACACACCGAGTCAAAGCTAAGGACATCACCGTTTTAACTCGGCAACTCGCGACT
ATGTTGGCTACGGGTGTGCCTATTGTACAAGCCATCAAGTTGGTATCAGATAATCATCGTAAAGCAGAAATGAAATCTAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGAGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACCGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACATATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTAACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCACGCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTTGG
TAGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGCTCTGGTATTCCCATCTTAA
TGAGCCTCAAAACCACCGCAAAGACTGCAGGTAATCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCC
GCGGGTATGCCGATGTATATTGCAATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACGGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.5

97.8

0.778
  pilC Vibrio campbellii strain DS40M4

73.892

99.267

0.734
  pilC Acinetobacter baylyi ADP1

41.809

100

0.418
  pilC Acinetobacter baumannii D1279779

41.337

98.778

0.408
  pilC Legionella pneumophila strain ERS1305867

42.065

97.066

0.408
  pilC Pseudomonas stutzeri DSM 10701

40.594

98.778

0.401
  pilG Neisseria gonorrhoeae MS11

40.602

97.555

0.396
  pilG Neisseria meningitidis 44/76-A

40.351

97.555

0.394

Multiple sequence alignment