Detailed information NTG1054926

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCS84_RS04220
• Genome accession: NZ_CP170046
• Coordinates: 850870..851739 (-)
• Length: 289 a.a.
• NCBI ID: WP_016793488.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.222.45.E8
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 845870..856739

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCS84_RS04185 (BCS84_04185)	rpsP	846897..847145 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
BCS84_RS04190 (BCS84_04190)	rimM	847170..847724 (+)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCS84_RS04195 (BCS84_04195)	trmD	847751..848491 (+)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCS84_RS04200 (BCS84_04200)	rplS	848551..848904 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
BCS84_RS04205 (BCS84_04205)	yacG	849207..849404 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCS84_RS04210 (BCS84_04210)	zapD	849486..850226 (-)	741	WP_010435917.1	cell division protein ZapD	-
BCS84_RS04215 (BCS84_04215)	coaE	850253..850867 (-)	615	WP_016793489.1	dephospho-CoA kinase	-
BCS84_RS04220 (BCS84_04220)	pilD	850870..851739 (-)	870	WP_016793488.1	prepilin peptidase	Machinery gene
BCS84_RS04225 (BCS84_04225)	pilC	851806..853035 (-)	1230	WP_016793487.1	type II secretion system F family protein	Machinery gene
BCS84_RS04230 (BCS84_04230)	pilB	853050..854738 (-)	1689	WP_016793486.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCS84_RS04235 (BCS84_04235)	pilA	854740..855150 (-)	411	WP_016793485.1	pilin	Machinery gene
BCS84_RS04240 (BCS84_04240)	nadC	855402..856292 (-)	891	WP_016768207.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32557.77 Da
• Isoelectric Point: 7.6347

>NTDB_id=1054926 BCS84_RS04220 WP_016793488.1 850870..851739(-) (pilD) [Vibrio cyclitrophicus strain 10N.222.45.E8]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRVI
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054926 BCS84_RS04220 WP_016793488.1 850870..851739(-) (pilD) [Vibrio cyclitrophicus strain 10N.222.45.E8]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGTAGTTTTCTCAA
CGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGGAAGTTTAACCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTAAGAGTAATC
GACAACATCCCGGTATTAAGCTGGTTATTCCTAAAGGGCAAGTGCCACAGTTGTGCTAACCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCGCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTATTGCCAGATCAAATCACCTTGCCT
TTAGTTTGGTCTGGTATCGCTTTAGCACTGTTTAATATCAGCCCGGTATCGCTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTATCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGATAAAGCCTTTCCGTTTGGCCCCTACCTTGCGATTGC
GGGATGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	69.444	99.654	0.692
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436