Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACEPPP_RS16315 | Genome accession | NZ_CP169217 |
| Coordinates | 3622868..3623116 (-) | Length | 82 a.a. |
| NCBI ID | WP_374088422.1 | Uniprot ID | - |
| Organism | Methylomicrobium lacus strain 22M6SE5-12 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3617868..3628116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEPPP_RS16295 (ACEPPP_16295) | hflC | 3618002..3618862 (+) | 861 | WP_374088418.1 | protease modulator HflC | - |
| ACEPPP_RS16300 (ACEPPP_16300) | - | 3618958..3620148 (+) | 1191 | WP_374088419.1 | ATP phosphoribosyltransferase regulatory subunit | - |
| ACEPPP_RS16305 (ACEPPP_16305) | - | 3620159..3621451 (+) | 1293 | WP_374088420.1 | adenylosuccinate synthase | - |
| ACEPPP_RS16310 (ACEPPP_16310) | galU | 3621789..3622670 (+) | 882 | WP_374088421.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ACEPPP_RS16315 (ACEPPP_16315) | comEA | 3622868..3623116 (-) | 249 | WP_374088422.1 | ComEA family DNA-binding protein | Machinery gene |
| ACEPPP_RS16320 (ACEPPP_16320) | - | 3623854..3624768 (+) | 915 | WP_374088423.1 | response regulator transcription factor | - |
| ACEPPP_RS16325 (ACEPPP_16325) | - | 3624741..3625214 (+) | 474 | WP_374088424.1 | PleD family two-component system response regulator | - |
| ACEPPP_RS16330 (ACEPPP_16330) | - | 3625251..3625766 (+) | 516 | WP_374088425.1 | chemotaxis protein CheW | - |
Sequence
Protein
Download Length: 82 a.a. Molecular weight: 9085.72 Da Isoelectric Point: 10.3840
>NTDB_id=1049861 ACEPPP_RS16315 WP_374088422.1 3622868..3623116(-) (comEA) [Methylomicrobium lacus strain 22M6SE5-12]
MKRILLLMTVFSFNAMSAPVNINKADAKTISDSLTNIGLKKAEAIVKYRTEKGAFKTVEELTNVTGIGEKTIEKNKKDIL
LQ
MKRILLLMTVFSFNAMSAPVNINKADAKTISDSLTNIGLKKAEAIVKYRTEKGAFKTVEELTNVTGIGEKTIEKNKKDIL
LQ
Nucleotide
Download Length: 249 bp
>NTDB_id=1049861 ACEPPP_RS16315 WP_374088422.1 3622868..3623116(-) (comEA) [Methylomicrobium lacus strain 22M6SE5-12]
ATGAAAAGAATCTTGCTTCTGATGACTGTATTTTCCTTCAATGCGATGTCTGCTCCCGTCAACATCAACAAGGCCGATGC
AAAGACCATTTCGGATTCGCTGACCAACATTGGCCTTAAAAAAGCGGAAGCCATCGTCAAATATCGCACCGAAAAAGGGG
CTTTTAAAACGGTCGAGGAGTTGACCAATGTGACCGGTATCGGCGAAAAGACGATCGAAAAAAACAAAAAGGATATTCTG
CTGCAATAA
ATGAAAAGAATCTTGCTTCTGATGACTGTATTTTCCTTCAATGCGATGTCTGCTCCCGTCAACATCAACAAGGCCGATGC
AAAGACCATTTCGGATTCGCTGACCAACATTGGCCTTAAAAAAGCGGAAGCCATCGTCAAATATCGCACCGAAAAAGGGG
CTTTTAAAACGGTCGAGGAGTTGACCAATGTGACCGGTATCGGCGAAAAGACGATCGAAAAAAACAAAAAGGATATTCTG
CTGCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
47.872 |
100 |
0.549 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
43.529 |
100 |
0.451 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
51.515 |
80.488 |
0.415 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.968 |
76.829 |
0.415 |
| comEA | Vibrio campbellii strain DS40M4 |
49.275 |
84.146 |
0.415 |
| comEA | Acinetobacter baylyi ADP1 |
44.595 |
90.244 |
0.402 |
| comEA | Vibrio cholerae strain A1552 |
53.226 |
75.61 |
0.402 |
| comEA | Vibrio cholerae C6706 |
53.226 |
75.61 |
0.402 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
43.836 |
89.024 |
0.39 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
50 |
78.049 |
0.39 |
| comE | Neisseria gonorrhoeae MS11 |
41.558 |
93.902 |
0.39 |
| comE | Neisseria gonorrhoeae MS11 |
41.558 |
93.902 |
0.39 |
| comE | Neisseria gonorrhoeae MS11 |
41.558 |
93.902 |
0.39 |
| comE | Neisseria gonorrhoeae MS11 |
41.558 |
93.902 |
0.39 |