Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ10_RS15900 Genome accession   NZ_CP167862
Coordinates   3741409..3742671 (+) Length   420 a.a.
NCBI ID   WP_372361235.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1325     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3731176..3744196 3741409..3742671 within 0


Gene organization within MGE regions


Location: 3731176..3744196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ10_RS15860 (ACCQ10_15860) sucD 3732202..3733077 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ACCQ10_RS15865 (ACCQ10_15865) sucC 3733102..3734271 (-) 1170 WP_039405518.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ10_RS15870 (ACCQ10_15870) - 3734503..3736116 (+) 1614 WP_039405515.1 PAS domain-containing sensor histidine kinase -
  ACCQ10_RS15875 (ACCQ10_15875) - 3736202..3736381 (+) 180 Protein_3109 hypothetical protein -
  ACCQ10_RS15880 (ACCQ10_15880) pilR 3736665..3738059 (+) 1395 WP_372361233.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ10_RS15885 (ACCQ10_15885) pilB 3738235..3739941 (-) 1707 WP_372363144.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ10_RS15890 (ACCQ10_15890) comP 3740115..3740528 (-) 414 WP_372361234.1 pilin Machinery gene
  ACCQ10_RS15895 (ACCQ10_15895) comP 3740661..3741083 (-) 423 WP_323475831.1 pilin Machinery gene
  ACCQ10_RS15900 (ACCQ10_15900) pilC 3741409..3742671 (+) 1263 WP_372361235.1 type II secretion system F family protein Machinery gene
  ACCQ10_RS15905 (ACCQ10_15905) - 3742678..3743541 (+) 864 WP_372361236.1 A24 family peptidase -
  ACCQ10_RS15910 (ACCQ10_15910) coaE 3743555..3744196 (+) 642 WP_372361237.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45936.24 Da        Isoelectric Point: 10.2301

>NTDB_id=1039957 ACCQ10_RS15900 WP_372361235.1 3741409..3742671(+) (pilC) [Xanthomonas sp. NCPPB 1325]
MSATRSVVKRSQPVDRSTSQLLLFIWEGTDKRGIKMKGEQSARNMNLLRAELRRQGITPSVVKPKPKPLFGAAGKKVTAK
DISFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKQLVSQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVTASRFTVSYWW
LMLLIIGGSAVGFIFAYKRSPSMQHGMDRLLLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEGLGIVAGATGNKVYE
EAVLRMRDDVSVGYPVNMAMKQVNIFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTV
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=1039957 ACCQ10_RS15900 WP_372361235.1 3741409..3742671(+) (pilC) [Xanthomonas sp. NCPPB 1325]
ATGTCAGCTACTCGCAGTGTCGTCAAGAGGTCGCAGCCAGTGGACAGAAGTACAAGCCAGCTGCTGCTTTTCATTTGGGA
AGGGACGGACAAACGCGGCATCAAGATGAAAGGCGAACAATCTGCACGCAACATGAATTTGTTGCGCGCAGAACTTCGTC
GACAGGGGATCACTCCTAGTGTAGTGAAACCTAAACCCAAGCCGCTTTTTGGCGCCGCTGGTAAAAAAGTTACCGCTAAA
GACATATCTTTCTTTAGTCGTCAGATGGCAACAATGATGAAGTCGGGCGTGCCTATTGTTAGCTCATTGGAAATAATAGG
TGAGGGGCACAAAAACCCCCGCATGAAACAATTGGTTTCTCAAATACGGACCGATATTGAAGGAGGCTCATCACTCCACG
AAGCCATCAGTAAGCACCCTGTTCAATTCGACGAACTTTACCGAAATCTTGTTCGTGCAGGTGAGGGAGCTGGCGTTCTT
GAGACAGTTCTTGACACTGTTGCAACATATAAAGAAAATATTGAAGCGCTAAAGGGGAAGATTAAAAAAGCACTTTTCTA
TCCGGCCATGGTCGTTGCAGTGGCGCTAATCGTTAGCGCAATCTTACTTATTTTCGTTGTACCCCAGTTTGAAGAGGTGT
TCAAAGGTTTCGGTGCAGAACTACCTGCATTCACCCAAATGATCGTGACCGCATCACGCTTTACGGTCAGTTATTGGTGG
CTCATGCTATTAATCATTGGGGGCTCCGCAGTAGGGTTCATCTTTGCTTATAAGCGCTCCCCAAGTATGCAACACGGGAT
GGATCGCCTGCTCTTGAAGGTTCCTGTGATTGGCCAAATCATGCATAACAGCTCGATCGCCCGATTTGCTCGCACAACTG
CTGTCACCTTTAAAGCTGGCGTGCCTTTGGTCGAGGGGTTAGGCATAGTCGCGGGCGCAACCGGAAATAAAGTTTATGAG
GAGGCCGTGTTACGCATGCGAGATGACGTATCTGTTGGCTACCCTGTGAACATGGCGATGAAACAGGTCAATATCTTCCC
TCATATGGTAATCCAAATGACCGCAATCGGCGAAGAAGCTGGCGCACTTGATACTATGTTATTCAAAGTGGCGGAGTACT
TCGAACAGGAAGTTAATAACGCCGTTGACGCTTTAAGCAGTCTCTTAGAGCCTATGATCATGGTATTCATCGGCACTGTC
GTAGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.904

94.524

0.51
  pilC Legionella pneumophila strain ERS1305867

52.463

96.667

0.507
  pilC Acinetobacter baylyi ADP1

50.617

96.429

0.488
  pilC Acinetobacter baumannii D1279779

51.134

94.524

0.483
  pilG Neisseria gonorrhoeae MS11

44.888

95.476

0.429
  pilG Neisseria meningitidis 44/76-A

44.389

95.476

0.424
  pilC Vibrio cholerae strain A1552

42.065

94.524

0.398
  pilC Vibrio campbellii strain DS40M4

40.741

96.429

0.393

Multiple sequence alignment