Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ10_RS15880 Genome accession   NZ_CP167862
Coordinates   3736665..3738059 (+) Length   464 a.a.
NCBI ID   WP_372361233.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1325     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3731176..3744196 3736665..3738059 within 0


Gene organization within MGE regions


Location: 3731176..3744196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ10_RS15860 (ACCQ10_15860) sucD 3732202..3733077 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ACCQ10_RS15865 (ACCQ10_15865) sucC 3733102..3734271 (-) 1170 WP_039405518.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ10_RS15870 (ACCQ10_15870) - 3734503..3736116 (+) 1614 WP_039405515.1 PAS domain-containing sensor histidine kinase -
  ACCQ10_RS15875 (ACCQ10_15875) - 3736202..3736381 (+) 180 Protein_3109 hypothetical protein -
  ACCQ10_RS15880 (ACCQ10_15880) pilR 3736665..3738059 (+) 1395 WP_372361233.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ10_RS15885 (ACCQ10_15885) pilB 3738235..3739941 (-) 1707 WP_372363144.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ10_RS15890 (ACCQ10_15890) comP 3740115..3740528 (-) 414 WP_372361234.1 pilin Machinery gene
  ACCQ10_RS15895 (ACCQ10_15895) comP 3740661..3741083 (-) 423 WP_323475831.1 pilin Machinery gene
  ACCQ10_RS15900 (ACCQ10_15900) pilC 3741409..3742671 (+) 1263 WP_372361235.1 type II secretion system F family protein Machinery gene
  ACCQ10_RS15905 (ACCQ10_15905) - 3742678..3743541 (+) 864 WP_372361236.1 A24 family peptidase -
  ACCQ10_RS15910 (ACCQ10_15910) coaE 3743555..3744196 (+) 642 WP_372361237.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50164.54 Da        Isoelectric Point: 6.4497

>NTDB_id=1039953 ACCQ10_RS15880 WP_372361233.1 3736665..3738059(+) (pilR) [Xanthomonas sp. NCPPB 1325]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAAAPGSAA
VEPREAVHDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1039953 ACCQ10_RS15880 WP_372361233.1 3736665..3738059(+) (pilR) [Xanthomonas sp. NCPPB 1325]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGAGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGTTACTGGCCAACAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAGGCACTACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTGAGCAAGCCGGT
GGACATCGGCGTGTTGCGTGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCTTGCTGGGCGATTCGACCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTAGTGGCGCGCACCATCCACGAGCAGGGCGC
GCGGGCGGCCGGCCCCTTTGTGCCGGTCAACTGCGGCGCCATCCCGGCCGAATTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCACATGCCGACAAGCCGGGCCTGTTCCAGGCCGCACACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGTTACGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGC
CTCGGGCGAAACCCTGGTGGACGTCCGCATCCTGTCTGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TCCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTCCCACCACTGCGCGAACGCGGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCCCGGCTGGCGCACAGCCATGGCCGCCCGATCCCGCTGCTGACGCCCTCGGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCGCCCCCGGCAGCGCCGCG
GTCGAACCGCGCGAAGCCGTCCACGACATCGACCCGGCGTCCGCCGCACTGCCCTCCTACATCGAGCAACTTGAGCGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGTATCACGTTTCGGGCGT
TGCGCTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.715

99.784

0.636
  pilR Acinetobacter baumannii strain A118

49.569

100

0.496

Multiple sequence alignment