Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ACCQ10_RS15890 Genome accession   NZ_CP167862
Coordinates   3740115..3740528 (-) Length   137 a.a.
NCBI ID   WP_372361234.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1325     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3731176..3744196 3740115..3740528 within 0


Gene organization within MGE regions


Location: 3731176..3744196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ10_RS15860 (ACCQ10_15860) sucD 3732202..3733077 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ACCQ10_RS15865 (ACCQ10_15865) sucC 3733102..3734271 (-) 1170 WP_039405518.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ10_RS15870 (ACCQ10_15870) - 3734503..3736116 (+) 1614 WP_039405515.1 PAS domain-containing sensor histidine kinase -
  ACCQ10_RS15875 (ACCQ10_15875) - 3736202..3736381 (+) 180 Protein_3109 hypothetical protein -
  ACCQ10_RS15880 (ACCQ10_15880) pilR 3736665..3738059 (+) 1395 WP_372361233.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ10_RS15885 (ACCQ10_15885) pilB 3738235..3739941 (-) 1707 WP_372363144.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ10_RS15890 (ACCQ10_15890) comP 3740115..3740528 (-) 414 WP_372361234.1 pilin Machinery gene
  ACCQ10_RS15895 (ACCQ10_15895) comP 3740661..3741083 (-) 423 WP_323475831.1 pilin Machinery gene
  ACCQ10_RS15900 (ACCQ10_15900) pilC 3741409..3742671 (+) 1263 WP_372361235.1 type II secretion system F family protein Machinery gene
  ACCQ10_RS15905 (ACCQ10_15905) - 3742678..3743541 (+) 864 WP_372361236.1 A24 family peptidase -
  ACCQ10_RS15910 (ACCQ10_15910) coaE 3743555..3744196 (+) 642 WP_372361237.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14513.79 Da        Isoelectric Point: 7.5894

>NTDB_id=1039955 ACCQ10_RS15890 WP_372361234.1 3740115..3740528(-) (comP) [Xanthomonas sp. NCPPB 1325]
MRRNFGFTLIELMIVVAIVAITASIALPAYQDYVIRARVAEAVVLLSGAKALVTENINNENLLAESACNGVSGAAPATSN
VSSFTCSGNGVLTVQTTAKAGAVTITLLPAYVQEEPVRWRCVRTEGAIKYVPPECRN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1039955 ACCQ10_RS15890 WP_372361234.1 3740115..3740528(-) (comP) [Xanthomonas sp. NCPPB 1325]
GTGAGGCGCAATTTTGGATTTACTCTAATAGAGTTGATGATAGTAGTTGCGATCGTAGCAATTACCGCATCAATTGCCTT
GCCCGCCTATCAGGATTATGTGATACGCGCTCGTGTAGCTGAGGCTGTTGTTTTGCTCAGTGGCGCAAAAGCGCTAGTAA
CTGAGAACATAAATAATGAGAATTTATTGGCGGAGTCTGCTTGTAACGGTGTCTCCGGTGCTGCTCCAGCTACTTCCAAT
GTAAGTAGTTTTACATGCAGTGGCAATGGAGTTTTGACCGTTCAAACTACAGCTAAGGCCGGGGCTGTTACCATTACATT
ATTGCCTGCATATGTGCAGGAGGAGCCTGTAAGGTGGAGGTGTGTGCGTACAGAAGGTGCAATAAAATACGTGCCTCCTG
AGTGCAGAAATTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

46.309

100

0.504
  pilA Ralstonia pseudosolanacearum GMI1000

41.718

100

0.496
  pilA2 Legionella pneumophila str. Paris

48.889

98.54

0.482
  pilA2 Legionella pneumophila strain ERS1305867

48.889

98.54

0.482
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.681

100

0.38

Multiple sequence alignment