Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACCQ10_RS15885 Genome accession   NZ_CP167862
Coordinates   3738235..3739941 (-) Length   568 a.a.
NCBI ID   WP_372363144.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1325     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3731176..3744196 3738235..3739941 within 0


Gene organization within MGE regions


Location: 3731176..3744196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ10_RS15860 (ACCQ10_15860) sucD 3732202..3733077 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ACCQ10_RS15865 (ACCQ10_15865) sucC 3733102..3734271 (-) 1170 WP_039405518.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ10_RS15870 (ACCQ10_15870) - 3734503..3736116 (+) 1614 WP_039405515.1 PAS domain-containing sensor histidine kinase -
  ACCQ10_RS15875 (ACCQ10_15875) - 3736202..3736381 (+) 180 Protein_3109 hypothetical protein -
  ACCQ10_RS15880 (ACCQ10_15880) pilR 3736665..3738059 (+) 1395 WP_372361233.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ10_RS15885 (ACCQ10_15885) pilB 3738235..3739941 (-) 1707 WP_372363144.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ10_RS15890 (ACCQ10_15890) comP 3740115..3740528 (-) 414 WP_372361234.1 pilin Machinery gene
  ACCQ10_RS15895 (ACCQ10_15895) comP 3740661..3741083 (-) 423 WP_323475831.1 pilin Machinery gene
  ACCQ10_RS15900 (ACCQ10_15900) pilC 3741409..3742671 (+) 1263 WP_372361235.1 type II secretion system F family protein Machinery gene
  ACCQ10_RS15905 (ACCQ10_15905) - 3742678..3743541 (+) 864 WP_372361236.1 A24 family peptidase -
  ACCQ10_RS15910 (ACCQ10_15910) coaE 3743555..3744196 (+) 642 WP_372361237.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 61906.99 Da        Isoelectric Point: 5.7363

>NTDB_id=1039954 ACCQ10_RS15885 WP_372363144.1 3738235..3739941(-) (pilB) [Xanthomonas sp. NCPPB 1325]
MGITGIARRLVQDGVLDEVNARAAMDQAASAKVPLPQWFAEKKLVSAAQLAAANAVEFGMPLMDVSVFDANQNAVKLVSE
ELLQKHQVLPLFKRGNRLFVGVSNPTQTRALDDIKFHTNLVVEPILVDEDQIRRTLEQWQASNASLGASLGDDDDDMGDL
DVSAGDEDMGAGGDSGVDAKGDDTPVVKFVNKVLVDAIRRGASDIHFEPYEDDYRVRLRIDGLLKNVAKAPVKLNQRIAA
RLKVMSQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDASAAKLGIEKLGYEADQQKLFLDAIHKP
YGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNVKRGMTFAAALRSFLRQDPDIIMVGEIR
DLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNHCKRKSTLPEHALLAEGF
TPEQVANIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIGAIVLEGGNAMQIAEAAQKIGIRDLRQSALMKAAHGVTSLA
EINRVTKD

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=1039954 ACCQ10_RS15885 WP_372363144.1 3738235..3739941(-) (pilB) [Xanthomonas sp. NCPPB 1325]
GTGGGAATTACGGGGATAGCTCGACGGTTAGTTCAAGACGGTGTGCTTGACGAAGTTAATGCTCGCGCAGCAATGGATCA
GGCTGCTTCGGCGAAAGTTCCATTACCACAGTGGTTTGCTGAGAAGAAGCTAGTTTCAGCCGCTCAGCTGGCTGCAGCCA
ATGCAGTCGAGTTCGGTATGCCGCTGATGGATGTGTCGGTGTTCGACGCCAATCAGAACGCGGTCAAGCTAGTCAGTGAA
GAGTTGCTCCAGAAGCACCAGGTGCTGCCGCTGTTCAAGCGCGGCAACCGGTTGTTCGTGGGGGTGAGCAACCCGACCCA
GACCCGGGCGCTGGACGACATCAAGTTCCATACCAATTTGGTGGTCGAGCCGATCCTGGTCGATGAGGACCAGATCCGCC
GTACCTTGGAGCAGTGGCAGGCCAGCAACGCATCGTTGGGCGCGTCTCTCGGAGACGATGATGACGACATGGGCGACCTG
GACGTGTCGGCCGGGGACGAGGACATGGGTGCCGGCGGGGATTCCGGGGTTGATGCCAAGGGCGACGACACGCCGGTGGT
GAAGTTCGTCAACAAGGTGCTGGTGGATGCGATCAGGCGGGGAGCCTCGGACATCCATTTCGAGCCATATGAAGACGACT
ACCGGGTGCGCTTGCGCATCGATGGCTTGTTGAAGAATGTGGCCAAGGCGCCGGTAAAGTTGAACCAGCGCATCGCGGCG
CGTTTGAAGGTGATGTCGCAGCTGGATATCGCCGAGAAGCGGGTACCGCAGGACGGGCGCATCAAGCTCAATCTGTCCAA
GACCAAGCAGATCGACTTCCGTGTCAGCACCTTGCCGACGCTGTTTGGCGAAAAGGTGGTGCTGCGTATCCTGGATGCCA
GTGCGGCCAAGCTGGGCATCGAGAAGTTGGGTTACGAGGCGGATCAGCAGAAGCTGTTCCTGGATGCGATCCATAAGCCC
TACGGCATGGTGCTGGTGACCGGGCCGACCGGCTCGGGTAAGACGGTGTCGTTGTATACGGCGCTGGGTATCCTCAACGA
TGAGACGCGGAATATTTCCACGGCCGAGGATCCGGTCGAAATTCGCTTGCCCGGTGTGAATCAGGTGCAGCAGAACGTCA
AGCGCGGCATGACCTTTGCCGCGGCATTGCGCTCGTTCCTGCGTCAGGACCCGGACATCATCATGGTCGGCGAAATCCGC
GACCTCGAAACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGTCACATGGTGCTGTCCACGCTGCATACCAACGATGC
GCCACAGACCATCGCGCGCTTGATGAACATGGGGATTGCGCCTTACAACATCACCTCGTCGGTGACCCTGGTCATTGCGC
AGCGTCTGGCGCGGCGGTTGTGCAATCACTGCAAGCGCAAGTCGACGTTGCCGGAGCATGCACTGCTGGCGGAAGGCTTT
ACGCCGGAGCAGGTTGCGAACATCGAGCTCTATGAGGCGGTTGGTTGCGACGAGTGCACCGAGGGCTACAAGGGCCGTAC
CGGTATCTACCAGGTGATGCCGATGACCGACGAGATTGGCGCCATTGTGCTGGAAGGCGGCAATGCCATGCAGATCGCCG
AGGCCGCGCAGAAGATCGGTATCCGCGATCTGCGGCAGTCTGCATTGATGAAGGCTGCGCACGGGGTGACCAGCCTGGCT
GAGATCAATCGGGTGACCAAGGACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(40-144)

Type II/IV secretion system protein (T2SSE)

(192-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.81

100

0.558
  pilB Acinetobacter baylyi ADP1

55.106

100

0.551
  pilB Legionella pneumophila strain ERS1305867

52.641

100

0.526
  pilF Neisseria gonorrhoeae MS11

48.944

100

0.489
  pilB Vibrio cholerae strain A1552

48.246

100

0.484
  pilB Vibrio campbellii strain DS40M4

45.87

100

0.46
  pilB Vibrio parahaemolyticus RIMD 2210633

46.154

98.415

0.454
  pilF Thermus thermophilus HB27

39.499

91.373

0.361
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.679

93.31

0.361

Multiple sequence alignment