Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ACDJ02_RS13435 | Genome accession | NZ_CP167777 |
| Coordinates | 2847274..2848392 (+) | Length | 372 a.a. |
| NCBI ID | WP_004990996.1 | Uniprot ID | A0A3F3L4S7 |
| Organism | Acinetobacter ursingii strain E5131942 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2784310..2864331 | 2847274..2848392 | within | 0 |
Gene organization within MGE regions
Location: 2784310..2864331
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACDJ02_RS13185 (ACDJ02_13185) | - | 2784354..2785553 (-) | 1200 | WP_004890115.1 | integrase arm-type DNA-binding domain-containing protein | - |
| ACDJ02_RS13190 (ACDJ02_13190) | - | 2786174..2786614 (-) | 441 | WP_004990861.1 | PaaI family thioesterase | - |
| ACDJ02_RS13195 (ACDJ02_13195) | - | 2786826..2788895 (-) | 2070 | WP_104794683.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| ACDJ02_RS13200 (ACDJ02_13200) | ilvC | 2789328..2790344 (-) | 1017 | WP_004990871.1 | ketol-acid reductoisomerase | - |
| ACDJ02_RS13205 (ACDJ02_13205) | ilvN | 2790464..2790955 (-) | 492 | WP_004990873.1 | acetolactate synthase small subunit | - |
| ACDJ02_RS13210 (ACDJ02_13210) | - | 2790955..2792679 (-) | 1725 | WP_005002924.1 | acetolactate synthase 3 large subunit | - |
| ACDJ02_RS13215 (ACDJ02_13215) | - | 2793212..2793583 (+) | 372 | WP_004996056.1 | DUF4124 domain-containing protein | - |
| ACDJ02_RS13220 (ACDJ02_13220) | leuS | 2793749..2796385 (+) | 2637 | WP_151724719.1 | leucine--tRNA ligase | - |
| ACDJ02_RS13225 (ACDJ02_13225) | lptE | 2796599..2797126 (+) | 528 | WP_151724720.1 | LPS assembly lipoprotein LptE | - |
| ACDJ02_RS13230 (ACDJ02_13230) | holA | 2797150..2798139 (+) | 990 | WP_151724721.1 | DNA polymerase III subunit delta | - |
| ACDJ02_RS13235 (ACDJ02_13235) | - | 2798242..2799594 (+) | 1353 | WP_151724722.1 | MacA family efflux pump subunit | - |
| ACDJ02_RS13240 (ACDJ02_13240) | - | 2799597..2801588 (+) | 1992 | WP_004996045.1 | MacB family efflux pump subunit | - |
| ACDJ02_RS13245 (ACDJ02_13245) | - | 2801600..2803003 (+) | 1404 | WP_151724723.1 | efflux transporter outer membrane subunit | - |
| ACDJ02_RS13250 (ACDJ02_13250) | - | 2803360..2805630 (-) | 2271 | WP_151724724.1 | TonB-dependent receptor | - |
| ACDJ02_RS13255 (ACDJ02_13255) | - | 2805639..2806886 (-) | 1248 | WP_371863724.1 | MFS transporter | - |
| ACDJ02_RS13260 (ACDJ02_13260) | - | 2806865..2807254 (-) | 390 | WP_049174748.1 | hypothetical protein | - |
| ACDJ02_RS13265 (ACDJ02_13265) | - | 2807251..2807886 (-) | 636 | WP_151724726.1 | GNAT family N-acetyltransferase | - |
| ACDJ02_RS13270 (ACDJ02_13270) | - | 2807900..2809723 (-) | 1824 | WP_151724727.1 | IucA/IucC family siderophore biosynthesis protein | - |
| ACDJ02_RS13275 (ACDJ02_13275) | - | 2809720..2811198 (-) | 1479 | WP_151724728.1 | lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein | - |
| ACDJ02_RS13280 (ACDJ02_13280) | - | 2811191..2812975 (-) | 1785 | WP_151724729.1 | IucA/IucC family siderophore biosynthesis protein | - |
| ACDJ02_RS13285 (ACDJ02_13285) | - | 2813591..2814496 (-) | 906 | WP_151725229.1 | LysR family transcriptional regulator | - |
| ACDJ02_RS13290 (ACDJ02_13290) | - | 2814753..2815415 (+) | 663 | WP_151725228.1 | RraA family protein | - |
| ACDJ02_RS13295 (ACDJ02_13295) | - | 2815415..2816626 (+) | 1212 | WP_151725227.1 | pyridoxal phosphate-dependent aminotransferase | - |
| ACDJ02_RS13300 (ACDJ02_13300) | - | 2816765..2818078 (+) | 1314 | WP_228268498.1 | cation:dicarboxylate symporter family transporter | - |
| ACDJ02_RS13305 (ACDJ02_13305) | - | 2818089..2819360 (+) | 1272 | WP_151725226.1 | Glu/Leu/Phe/Val dehydrogenase | - |
| ACDJ02_RS13310 (ACDJ02_13310) | - | 2819922..2820188 (+) | 267 | WP_004990919.1 | hypothetical protein | - |
| ACDJ02_RS13315 (ACDJ02_13315) | - | 2820578..2821786 (+) | 1209 | WP_262458484.1 | MFS transporter | - |
| ACDJ02_RS13320 (ACDJ02_13320) | - | 2821888..2823336 (-) | 1449 | WP_004990925.1 | trehalose-6-phosphate synthase | - |
| ACDJ02_RS13325 (ACDJ02_13325) | otsB | 2823329..2824174 (-) | 846 | WP_280095304.1 | trehalose-phosphatase | - |
| ACDJ02_RS13330 (ACDJ02_13330) | - | 2824609..2825082 (+) | 474 | WP_004990929.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| ACDJ02_RS13335 (ACDJ02_13335) | - | 2825693..2825953 (+) | 261 | WP_004990931.1 | hypothetical protein | - |
| ACDJ02_RS13340 (ACDJ02_13340) | - | 2826429..2826895 (+) | 467 | Protein_2599 | BLUF domain-containing protein | - |
| ACDJ02_RS13345 (ACDJ02_13345) | - | 2827144..2827248 (-) | 105 | WP_372376516.1 | hypothetical protein | - |
| ACDJ02_RS13350 (ACDJ02_13350) | - | 2827342..2827497 (-) | 156 | WP_005002873.1 | hypothetical protein | - |
| ACDJ02_RS13355 (ACDJ02_13355) | - | 2827565..2828350 (-) | 786 | WP_372375240.1 | hypothetical protein | - |
| ACDJ02_RS13360 (ACDJ02_13360) | - | 2828442..2829370 (-) | 929 | Protein_2603 | IS5-like element ISAba10 family transposase | - |
| ACDJ02_RS13365 (ACDJ02_13365) | - | 2829622..2831037 (+) | 1416 | WP_372375241.1 | PLP-dependent aminotransferase family protein | - |
| ACDJ02_RS13370 (ACDJ02_13370) | - | 2831119..2832663 (-) | 1545 | WP_004990955.1 | DHA2 family efflux MFS transporter permease subunit | - |
| ACDJ02_RS13375 (ACDJ02_13375) | - | 2832667..2833821 (-) | 1155 | WP_004990956.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| ACDJ02_RS13380 (ACDJ02_13380) | - | 2834094..2834591 (-) | 498 | WP_004990957.1 | thioesterase family protein | - |
| ACDJ02_RS13385 (ACDJ02_13385) | hemB | 2834700..2835713 (+) | 1014 | WP_004990964.1 | porphobilinogen synthase | - |
| ACDJ02_RS13390 (ACDJ02_13390) | thiO | 2835773..2836894 (+) | 1122 | WP_004990968.1 | glycine oxidase ThiO | - |
| ACDJ02_RS13395 (ACDJ02_13395) | - | 2836920..2837372 (-) | 453 | WP_280095306.1 | ABZJ_00895 family protein | - |
| ACDJ02_RS13400 (ACDJ02_13400) | - | 2837730..2838305 (+) | 576 | WP_262458489.1 | hypothetical protein | - |
| ACDJ02_RS13405 (ACDJ02_13405) | - | 2838455..2839720 (+) | 1266 | WP_372376517.1 | exonuclease SbcCD subunit D | - |
| ACDJ02_RS13410 (ACDJ02_13410) | - | 2839730..2843326 (+) | 3597 | WP_262545105.1 | AAA family ATPase | - |
| ACDJ02_RS13415 (ACDJ02_13415) | - | 2843510..2844301 (+) | 792 | WP_262545103.1 | transglutaminase family protein | - |
| ACDJ02_RS13420 (ACDJ02_13420) | - | 2844403..2845248 (-) | 846 | WP_044436293.1 | undecaprenyl-diphosphate phosphatase | - |
| ACDJ02_RS13425 (ACDJ02_13425) | - | 2845399..2846085 (-) | 687 | WP_270907916.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ACDJ02_RS13430 (ACDJ02_13430) | pilT | 2846209..2847246 (+) | 1038 | WP_004990994.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACDJ02_RS13435 (ACDJ02_13435) | pilU | 2847274..2848392 (+) | 1119 | WP_004990996.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ACDJ02_RS13440 (ACDJ02_13440) | fur | 2848466..2848906 (-) | 441 | WP_004990998.1 | ferric iron uptake transcriptional regulator | - |
| ACDJ02_RS13445 (ACDJ02_13445) | - | 2849018..2849416 (+) | 399 | WP_004991001.1 | outer membrane protein assembly factor BamE | - |
| ACDJ02_RS13450 (ACDJ02_13450) | - | 2849460..2849780 (-) | 321 | WP_004991003.1 | RnfH family protein | - |
| ACDJ02_RS13455 (ACDJ02_13455) | - | 2849777..2850862 (-) | 1086 | WP_336148870.1 | hypothetical protein | - |
| ACDJ02_RS13460 (ACDJ02_13460) | - | 2851025..2851474 (-) | 450 | WP_004991008.1 | bacteriohemerythrin | - |
| ACDJ02_RS13465 (ACDJ02_13465) | - | 2851810..2852658 (-) | 849 | WP_035254157.1 | class II glutamine amidotransferase | - |
| ACDJ02_RS13470 (ACDJ02_13470) | - | 2852762..2853541 (-) | 780 | WP_151725111.1 | GNAT family N-acetyltransferase | - |
| ACDJ02_RS13475 (ACDJ02_13475) | argB | 2853662..2854573 (-) | 912 | WP_004991011.1 | acetylglutamate kinase | - |
| ACDJ02_RS13480 (ACDJ02_13480) | - | 2854584..2856008 (-) | 1425 | WP_151725112.1 | phosphomannomutase/phosphoglucomutase | - |
| ACDJ02_RS13485 (ACDJ02_13485) | dut | 2856187..2856639 (-) | 453 | WP_262465994.1 | dUTP diphosphatase | - |
| ACDJ02_RS13490 (ACDJ02_13490) | - | 2856664..2858703 (-) | 2040 | WP_120370058.1 | UvrD-helicase domain-containing protein | - |
| ACDJ02_RS13495 (ACDJ02_13495) | - | 2858825..2859481 (-) | 657 | WP_336165364.1 | OmpA family protein | - |
| ACDJ02_RS13500 (ACDJ02_13500) | - | 2859731..2860639 (+) | 909 | Protein_2631 | acyltransferase | - |
| ACDJ02_RS13505 (ACDJ02_13505) | - | 2860689..2861741 (+) | 1053 | WP_004995954.1 | hypothetical protein | - |
| ACDJ02_RS13510 (ACDJ02_13510) | minC | 2861869..2862591 (+) | 723 | WP_004991019.1 | septum site-determining protein MinC | - |
| ACDJ02_RS13515 (ACDJ02_13515) | minD | 2862658..2863470 (+) | 813 | WP_004991021.1 | septum site-determining protein MinD | - |
| ACDJ02_RS13520 (ACDJ02_13520) | minE | 2863473..2863745 (+) | 273 | WP_005002814.1 | cell division topological specificity factor MinE | - |
| ACDJ02_RS13525 (ACDJ02_13525) | - | 2863890..2864177 (+) | 288 | WP_004995952.1 | PA4642 family protein | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 41822.00 Da Isoelectric Point: 6.0604
>NTDB_id=1039325 ACDJ02_RS13435 WP_004990996.1 2847274..2848392(+) (pilU) [Acinetobacter ursingii strain E5131942]
MDFNDLLNLMIEQQASDLFVTAGVEPSMKINGQIVPVSKTKLNAEVVGQLIQSIMSDKQRKEFDESRECNFAIVNREKTA
RFRVSAFQQRDMPGMVLRRIETIIPTMDELRLPPILKDLAMTKRGIIIFVGATGTGKSTSLASMIGYRNQNSKGHIITVE
DPIEFIHEHAGCIVTQREVGIDTDSFDVALKNTLRQAPDVILIGEIRSREVMDYAIAFAETGHLVLATLHANNANQALDR
IIHFFESDRHNQLYMDLSLNLKAMVAQQLIPTPDGNSRRAAIEILINTPLLADYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLSIKLSEEGAEQLLNASRNITFDGQ
MDFNDLLNLMIEQQASDLFVTAGVEPSMKINGQIVPVSKTKLNAEVVGQLIQSIMSDKQRKEFDESRECNFAIVNREKTA
RFRVSAFQQRDMPGMVLRRIETIIPTMDELRLPPILKDLAMTKRGIIIFVGATGTGKSTSLASMIGYRNQNSKGHIITVE
DPIEFIHEHAGCIVTQREVGIDTDSFDVALKNTLRQAPDVILIGEIRSREVMDYAIAFAETGHLVLATLHANNANQALDR
IIHFFESDRHNQLYMDLSLNLKAMVAQQLIPTPDGNSRRAAIEILINTPLLADYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLSIKLSEEGAEQLLNASRNITFDGQ
Nucleotide
Download Length: 1119 bp
>NTDB_id=1039325 ACDJ02_RS13435 WP_004990996.1 2847274..2848392(+) (pilU) [Acinetobacter ursingii strain E5131942]
ATGGATTTTAATGATCTTCTCAATCTGATGATTGAACAACAAGCATCAGACTTGTTTGTCACCGCAGGTGTGGAACCTTC
GATGAAAATTAATGGTCAGATTGTCCCAGTGTCTAAGACTAAGCTGAATGCTGAGGTCGTTGGACAACTGATTCAGTCCA
TTATGTCTGATAAGCAACGCAAGGAATTTGACGAGAGCAGAGAGTGTAACTTTGCCATTGTAAATCGGGAAAAAACCGCA
CGTTTTCGTGTCAGTGCATTTCAGCAGCGTGATATGCCAGGCATGGTATTACGTCGTATCGAAACGATTATCCCTACAAT
GGATGAATTACGCTTACCGCCCATTCTTAAAGATCTGGCCATGACCAAACGTGGCATTATTATCTTTGTTGGGGCAACTG
GTACGGGTAAATCCACTTCATTGGCATCCATGATTGGTTATCGAAATCAGAACTCCAAAGGTCATATCATCACGGTTGAA
GATCCAATCGAGTTCATTCATGAACACGCTGGTTGTATTGTGACTCAACGTGAAGTCGGTATTGATACAGACTCTTTCGA
TGTAGCCCTGAAAAACACACTACGACAAGCCCCTGATGTGATTTTGATTGGTGAGATTCGTTCACGTGAGGTCATGGACT
ACGCCATTGCCTTTGCTGAAACGGGACATCTGGTCTTAGCGACATTACACGCCAACAACGCCAACCAAGCATTGGATCGT
ATTATTCATTTCTTTGAAAGTGATCGCCATAATCAGCTCTATATGGATCTCTCGCTCAATCTAAAAGCCATGGTGGCACA
GCAATTGATCCCAACGCCAGATGGCAATTCACGTCGTGCTGCGATTGAAATTCTGATCAATACACCATTACTTGCTGACT
ATATTCGTAAAGGTGAAATTCATGAAATCAAAGATTTAATGAAACGTTCACGTGAACTCGGCATGCAAACCTTTGATCAG
GCTTTATTTGATTTATATAAAGCAGGTCAAATTACCTATAAAGATGCCTTGAAACATGCCGACTCGCCAAACGATCTACG
CCTCAGTATCAAACTTTCAGAGGAAGGTGCAGAACAACTGCTGAACGCCAGCCGTAATATTACTTTCGATGGTCAGTAA
ATGGATTTTAATGATCTTCTCAATCTGATGATTGAACAACAAGCATCAGACTTGTTTGTCACCGCAGGTGTGGAACCTTC
GATGAAAATTAATGGTCAGATTGTCCCAGTGTCTAAGACTAAGCTGAATGCTGAGGTCGTTGGACAACTGATTCAGTCCA
TTATGTCTGATAAGCAACGCAAGGAATTTGACGAGAGCAGAGAGTGTAACTTTGCCATTGTAAATCGGGAAAAAACCGCA
CGTTTTCGTGTCAGTGCATTTCAGCAGCGTGATATGCCAGGCATGGTATTACGTCGTATCGAAACGATTATCCCTACAAT
GGATGAATTACGCTTACCGCCCATTCTTAAAGATCTGGCCATGACCAAACGTGGCATTATTATCTTTGTTGGGGCAACTG
GTACGGGTAAATCCACTTCATTGGCATCCATGATTGGTTATCGAAATCAGAACTCCAAAGGTCATATCATCACGGTTGAA
GATCCAATCGAGTTCATTCATGAACACGCTGGTTGTATTGTGACTCAACGTGAAGTCGGTATTGATACAGACTCTTTCGA
TGTAGCCCTGAAAAACACACTACGACAAGCCCCTGATGTGATTTTGATTGGTGAGATTCGTTCACGTGAGGTCATGGACT
ACGCCATTGCCTTTGCTGAAACGGGACATCTGGTCTTAGCGACATTACACGCCAACAACGCCAACCAAGCATTGGATCGT
ATTATTCATTTCTTTGAAAGTGATCGCCATAATCAGCTCTATATGGATCTCTCGCTCAATCTAAAAGCCATGGTGGCACA
GCAATTGATCCCAACGCCAGATGGCAATTCACGTCGTGCTGCGATTGAAATTCTGATCAATACACCATTACTTGCTGACT
ATATTCGTAAAGGTGAAATTCATGAAATCAAAGATTTAATGAAACGTTCACGTGAACTCGGCATGCAAACCTTTGATCAG
GCTTTATTTGATTTATATAAAGCAGGTCAAATTACCTATAAAGATGCCTTGAAACATGCCGACTCGCCAAACGATCTACG
CCTCAGTATCAAACTTTCAGAGGAAGGTGCAGAACAACTGCTGAACGCCAGCCGTAATATTACTTTCGATGGTCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
76.984 |
100 |
0.782 |
| pilU | Pseudomonas stutzeri DSM 10701 |
69.811 |
99.731 |
0.696 |
| pilU | Vibrio cholerae strain A1552 |
55.84 |
94.355 |
0.527 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.484 |
97.849 |
0.406 |
| pilT | Legionella pneumophila strain Lp02 |
40.828 |
90.86 |
0.371 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.828 |
90.86 |
0.371 |
| pilT | Pseudomonas aeruginosa PAK |
39.306 |
93.011 |
0.366 |
| pilT | Acinetobacter baumannii strain A118 |
39.067 |
92.204 |
0.36 |
| pilT | Acinetobacter baumannii D1279779 |
39.067 |
92.204 |
0.36 |
| pilT | Acinetobacter baylyi ADP1 |
39.067 |
92.204 |
0.36 |
| pilT | Acinetobacter nosocomialis M2 |
39.067 |
92.204 |
0.36 |