Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACB341_RS05275 Genome accession   NZ_CP167001
Coordinates   1036179..1036604 (-) Length   141 a.a.
NCBI ID   WP_011285575.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1031179..1041604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB341_RS05220 (ACB341_05225) - 1032107..1032541 (-) 435 WP_011054810.1 ArpU family phage packaging/lysis transcriptional regulator -
  ACB341_RS05225 (ACB341_05230) - 1032827..1033093 (-) 267 WP_011018131.1 hypothetical protein -
  ACB341_RS05230 (ACB341_05235) - 1033090..1033614 (-) 525 WP_011285572.1 DUF1642 domain-containing protein -
  ACB341_RS05235 (ACB341_05240) - 1033617..1034249 (-) 633 WP_011018133.1 N-6 DNA methylase -
  ACB341_RS05240 (ACB341_05245) - 1034251..1034535 (-) 285 WP_011018134.1 hypothetical protein -
  ACB341_RS05245 (ACB341_05250) - 1034532..1034702 (-) 171 WP_002995952.1 hypothetical protein -
  ACB341_RS05250 (ACB341_05255) - 1034699..1034935 (-) 237 WP_002995955.1 DUF3310 domain-containing protein -
  ACB341_RS05255 (ACB341_05260) - 1034935..1035180 (-) 246 WP_011285573.1 hypothetical protein -
  ACB341_RS05260 (ACB341_05265) - 1035177..1035533 (-) 357 WP_011284873.1 hypothetical protein -
  ACB341_RS05265 (ACB341_05270) - 1035530..1035970 (-) 441 WP_011285574.1 RusA family crossover junction endodeoxyribonuclease -
  ACB341_RS05270 (ACB341_05275) - 1035970..1036173 (-) 204 WP_011106686.1 hypothetical protein -
  ACB341_RS05275 (ACB341_05280) ssb 1036179..1036604 (-) 426 WP_011285575.1 single-stranded DNA-binding protein Machinery gene
  ACB341_RS05280 (ACB341_05285) - 1036597..1037271 (-) 675 WP_011285576.1 ERF family protein -
  ACB341_RS05285 (ACB341_05290) - 1037272..1037754 (-) 483 WP_011285577.1 siphovirus Gp157 family protein -
  ACB341_RS05290 (ACB341_05295) - 1037776..1038030 (-) 255 WP_011285578.1 hypothetical protein -
  ACB341_RS05295 (ACB341_05300) - 1038011..1038364 (-) 354 WP_011285579.1 hypothetical protein -
  ACB341_RS05300 (ACB341_05305) - 1038505..1039287 (-) 783 WP_011285581.1 ATP-binding protein -
  ACB341_RS05305 (ACB341_05310) - 1039274..1040104 (-) 831 WP_009881060.1 phage replisome organizer N-terminal domain-containing protein -
  ACB341_RS05310 (ACB341_05315) - 1040118..1040306 (-) 189 Protein_997 XRE family transcriptional regulator -
  ACB341_RS05315 (ACB341_05320) - 1040540..1040779 (+) 240 WP_227874181.1 hypothetical protein -
  ACB341_RS05320 (ACB341_05325) - 1040910..1041119 (+) 210 WP_011017885.1 hypothetical protein -
  ACB341_RS05325 (ACB341_05330) - 1041229..1041429 (-) 201 WP_002992770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15995.63 Da        Isoelectric Point: 4.5748

>NTDB_id=1036867 ACB341_RS05275 WP_011285575.1 1036179..1036604(-) (ssb) [Streptococcus pyogenes strain Isolate 31]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQEQRVYVTEVVAESFQMLESRNSQQQSGQDNSSQNDNSQPFGNSNPMDISDDDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1036867 ACB341_RS05275 WP_011285575.1 1036179..1036604(-) (ssb) [Streptococcus pyogenes strain Isolate 31]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGAACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGAAA
TAGCCAGCAACAATCTGGTCAAGATAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATA
TTTCAGACGATGATCTGCCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.667
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.66
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.972

100

0.44
  ssbB/cilA Streptococcus pneumoniae Rx1

43.262

100

0.433
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.262

100

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

43.262

100

0.433
  ssbB/cilA Streptococcus pneumoniae D39

43.262

100

0.433
  ssbB/cilA Streptococcus pneumoniae R6

43.262

100

0.433
  ssbB/cilA Streptococcus mitis SK321

43.262

100

0.433
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

79.433

0.411
  ssbA Streptococcus mutans UA159

40.426

100

0.404
  ssb Glaesserella parasuis strain SC1401

29.379

100

0.369
  ssbB Lactococcus lactis subsp. cremoris KW2

49.524

74.468

0.369

Multiple sequence alignment