Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   ACA346_RS09830 Genome accession   NZ_CP166970
Coordinates   1931263..1932213 (-) Length   316 a.a.
NCBI ID   WP_318150623.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1926263..1937213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS09790 (ACA346_09790) - 1926266..1927453 (-) 1188 WP_277837563.1 acetate kinase -
  ACA346_RS09795 (ACA346_09795) comYH 1927503..1928456 (-) 954 WP_418126813.1 class I SAM-dependent methyltransferase Machinery gene
  ACA346_RS09800 (ACA346_09800) comGG 1928476..1928976 (-) 501 WP_418127599.1 competence type IV pilus minor pilin ComGG -
  ACA346_RS09805 (ACA346_09805) comYF 1928954..1929412 (-) 459 WP_418126814.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACA346_RS09810 (ACA346_09810) comGE 1929375..1929668 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  ACA346_RS09815 (ACA346_09815) comGD 1929640..1930044 (-) 405 WP_418126815.1 competence type IV pilus minor pilin ComGD -
  ACA346_RS09820 (ACA346_09820) comYC 1930034..1930312 (-) 279 WP_217374331.1 competence type IV pilus major pilin ComGC Machinery gene
  ACA346_RS09825 (ACA346_09825) comYB 1930314..1931351 (-) 1038 WP_318151035.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACA346_RS09830 (ACA346_09830) comYA 1931263..1932213 (-) 951 WP_318150623.1 competence type IV pilus ATPase ComGA Machinery gene
  ACA346_RS09835 (ACA346_09835) - 1932301..1933251 (+) 951 WP_418127600.1 S66 family peptidase -
  ACA346_RS09840 (ACA346_09840) - 1933312..1933653 (-) 342 WP_217374334.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35529.51 Da        Isoelectric Point: 5.4818

>NTDB_id=1036455 ACA346_RS09830 WP_318150623.1 1931263..1932213(-) (comYA) [Streptococcus parasuis strain NX1]
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRVMDEREYIQELTEDEVMAIISHFKFLAGLNVGEKRRSQQGSCEYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALDRIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISPRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1036455 ACA346_RS09830 WP_318150623.1 1931263..1932213(-) (comYA) [Streptococcus parasuis strain NX1]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAGTAATGGATGAACGGGAATATATTCAAGAATTAACCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTAGCCAGCAAGGCTCTTGTGAATACGAT
TATGGTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGAGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGATAGAATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCGGGGCCGGTCGGTTCTGGCAAGACCACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTAGAGATGCAGAAACTG
CTCGAGCAGTAATTCGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

67.846

98.418

0.668
  comYA Streptococcus mutans UA140

67.846

98.418

0.668
  comYA Streptococcus gordonii str. Challis substr. CH1

67.742

98.101

0.665
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.516

98.101

0.633
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.194

98.101

0.63
  comGA Lactococcus lactis subsp. cremoris KW2

55.521

100

0.557
  comGA Latilactobacillus sakei subsp. sakei 23K

42.238

87.658

0.37

Multiple sequence alignment