Detailed information NTG1036452

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: ACA346_RS09805
• Genome accession: NZ_CP166970
• Coordinates: 1928954..1929412 (-)
• Length: 152 a.a.
• NCBI ID: WP_418126814.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain NX1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1923954..1934412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA346_RS09780 (ACA346_09780)	-	1924149..1925405 (-)	1257	WP_217375198.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
ACA346_RS09785 (ACA346_09785)	-	1925460..1926011 (-)	552	WP_277845146.1	folate family ECF transporter S component	-
ACA346_RS09790 (ACA346_09790)	-	1926266..1927453 (-)	1188	WP_277837563.1	acetate kinase	-
ACA346_RS09795 (ACA346_09795)	comYH	1927503..1928456 (-)	954	WP_418126813.1	class I SAM-dependent methyltransferase	Machinery gene
ACA346_RS09800 (ACA346_09800)	comGG	1928476..1928976 (-)	501	WP_418127599.1	competence type IV pilus minor pilin ComGG	-
ACA346_RS09805 (ACA346_09805)	comYF	1928954..1929412 (-)	459	WP_418126814.1	competence type IV pilus minor pilin ComGF	Machinery gene
ACA346_RS09810 (ACA346_09810)	comGE	1929375..1929668 (-)	294	WP_105126461.1	competence type IV pilus minor pilin ComGE	-
ACA346_RS09815 (ACA346_09815)	comGD	1929640..1930044 (-)	405	WP_418126815.1	competence type IV pilus minor pilin ComGD	-
ACA346_RS09820 (ACA346_09820)	comYC	1930034..1930312 (-)	279	WP_217374331.1	competence type IV pilus major pilin ComGC	Machinery gene
ACA346_RS09825 (ACA346_09825)	comYB	1930314..1931351 (-)	1038	WP_318151035.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACA346_RS09830 (ACA346_09830)	comYA	1931263..1932213 (-)	951	WP_318150623.1	competence type IV pilus ATPase ComGA	Machinery gene
ACA346_RS09835 (ACA346_09835)	-	1932301..1933251 (+)	951	WP_418127600.1	S66 family peptidase	-
ACA346_RS09840 (ACA346_09840)	-	1933312..1933653 (-)	342	WP_217374334.1	DUF1033 family protein	-

Sequence

Protein

• Length: 152 a.a.
• Molecular weight: 17396.98 Da
• Isoelectric Point: 8.9212

>NTDB_id=1036452 ACA346_RS09805 WP_418126814.1 1928954..1929412(-) (comYF) [Streptococcus parasuis strain NX1]
MKVRRLSGLRKTKLAAFTLLECLIALLTISGSLLVIEGLSKLIAHEVRYQERHVEKQWLLFCDQLRAEWEGASLDRVDSG
KLYLTKGEKSLAFGKSVADDFRKTNANGQGYQPMLYKVYSATYAQQGEVIQLDVTFESGEERSFRYFFEKTN

Nucleotide

• Length: 459 bp

>NTDB_id=1036452 ACA346_RS09805 WP_418126814.1 1928954..1929412(-) (comYF) [Streptococcus parasuis strain NX1]
ATGAAGGTAAGGAGGTTATCCGGATTGAGAAAAACTAAGTTAGCCGCGTTCACCCTCTTGGAATGTTTAATTGCCTTACT
CACTATTTCTGGCAGCTTGCTAGTGATTGAAGGTTTATCAAAATTGATAGCGCATGAGGTTCGCTATCAAGAGCGTCATG
TGGAAAAACAGTGGTTACTATTTTGTGATCAATTGCGGGCTGAATGGGAAGGAGCAAGTCTTGATCGGGTTGATTCTGGA
AAGTTGTACCTAACCAAAGGGGAAAAATCATTGGCATTTGGCAAGTCTGTGGCAGATGATTTTCGCAAGACAAATGCAAA
TGGTCAGGGCTATCAGCCCATGTTGTACAAAGTTTATTCAGCTACTTACGCCCAACAAGGCGAGGTTATACAGCTGGATG
TAACATTTGAAAGTGGGGAGGAAAGGAGTTTTAGGTATTTTTTTGAAAAAACGAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (47-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	54.225	93.421	0.507
comYF	Streptococcus mutans UA140	54.225	93.421	0.507
comGF	Lactococcus lactis subsp. cremoris KW2	48.227	92.763	0.447
comGF/cglF	Streptococcus mitis NCTC 12261	47.143	92.105	0.434
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	90.789	0.414
comGF/cglF	Streptococcus pneumoniae D39	45.652	90.789	0.414
comGF/cglF	Streptococcus pneumoniae R6	45.652	90.789	0.414
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	90.789	0.414
comGF/cglF	Streptococcus mitis SK321	44.604	91.447	0.408