Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | ACA346_RS09795 | Genome accession | NZ_CP166970 |
| Coordinates | 1927503..1928456 (-) | Length | 317 a.a. |
| NCBI ID | WP_418126813.1 | Uniprot ID | - |
| Organism | Streptococcus parasuis strain NX1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1922503..1933456
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACA346_RS09770 (ACA346_09770) | - | 1922546..1922830 (-) | 285 | WP_171989715.1 | DUF4651 domain-containing protein | - |
| ACA346_RS09775 (ACA346_09775) | pepA | 1923043..1924104 (+) | 1062 | WP_217374324.1 | glutamyl aminopeptidase | - |
| ACA346_RS09780 (ACA346_09780) | - | 1924149..1925405 (-) | 1257 | WP_217375198.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| ACA346_RS09785 (ACA346_09785) | - | 1925460..1926011 (-) | 552 | WP_277845146.1 | folate family ECF transporter S component | - |
| ACA346_RS09790 (ACA346_09790) | - | 1926266..1927453 (-) | 1188 | WP_277837563.1 | acetate kinase | - |
| ACA346_RS09795 (ACA346_09795) | comYH | 1927503..1928456 (-) | 954 | WP_418126813.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ACA346_RS09800 (ACA346_09800) | comGG | 1928476..1928976 (-) | 501 | WP_418127599.1 | competence type IV pilus minor pilin ComGG | - |
| ACA346_RS09805 (ACA346_09805) | comYF | 1928954..1929412 (-) | 459 | WP_418126814.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| ACA346_RS09810 (ACA346_09810) | comGE | 1929375..1929668 (-) | 294 | WP_105126461.1 | competence type IV pilus minor pilin ComGE | - |
| ACA346_RS09815 (ACA346_09815) | comGD | 1929640..1930044 (-) | 405 | WP_418126815.1 | competence type IV pilus minor pilin ComGD | - |
| ACA346_RS09820 (ACA346_09820) | comYC | 1930034..1930312 (-) | 279 | WP_217374331.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACA346_RS09825 (ACA346_09825) | comYB | 1930314..1931351 (-) | 1038 | WP_318151035.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACA346_RS09830 (ACA346_09830) | comYA | 1931263..1932213 (-) | 951 | WP_318150623.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACA346_RS09835 (ACA346_09835) | - | 1932301..1933251 (+) | 951 | WP_418127600.1 | S66 family peptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35638.89 Da Isoelectric Point: 4.6418
>NTDB_id=1036451 ACA346_RS09795 WP_418126813.1 1927503..1928456(-) (comYH) [Streptococcus parasuis strain NX1]
MKYEKIEQAYNLLLENVQTIQNQLGSNIYDAMIEQNAAYVAGQHETELVLNNNQILRELVLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEKANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
MKYEKIEQAYNLLLENVQTIQNQLGSNIYDAMIEQNAAYVAGQHETELVLNNNQILRELVLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEKANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=1036451 ACA346_RS09795 WP_418126813.1 1927503..1928456(-) (comYH) [Streptococcus parasuis strain NX1]
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACGATACAAAATCAACTTGGGTCCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGGTCAACATGAAACCGAACTTGTTCTCAACAATAATC
AAATCTTGAGAGAATTAGTCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTACTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGACTCTATCGGATTTATTTTATCTTTCCTTGTTGACCAGTTGGTCTC
TACTCCAAGAGTAACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCCAGCCAGAAGG
AATTAGATTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCGGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACATACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACTAGTCCGCAA
AGCGATTTATTAAAAGGCTGGTTACAAGAAAAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTGA
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACGATACAAAATCAACTTGGGTCCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGGTCAACATGAAACCGAACTTGTTCTCAACAATAATC
AAATCTTGAGAGAATTAGTCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTACTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGACTCTATCGGATTTATTTTATCTTTCCTTGTTGACCAGTTGGTCTC
TACTCCAAGAGTAACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCCAGCCAGAAGG
AATTAGATTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCGGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACATACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACTAGTCCGCAA
AGCGATTTATTAAAAGGCTGGTTACAAGAAAAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
59.177 |
99.685 |
0.59 |
| comYH | Streptococcus mutans UA159 |
58.861 |
99.685 |
0.587 |