Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   ACA346_RS09825 Genome accession   NZ_CP166970
Coordinates   1930314..1931351 (-) Length   345 a.a.
NCBI ID   WP_318151035.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NX1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1925314..1936351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA346_RS09785 (ACA346_09785) - 1925460..1926011 (-) 552 WP_277845146.1 folate family ECF transporter S component -
  ACA346_RS09790 (ACA346_09790) - 1926266..1927453 (-) 1188 WP_277837563.1 acetate kinase -
  ACA346_RS09795 (ACA346_09795) comYH 1927503..1928456 (-) 954 WP_418126813.1 class I SAM-dependent methyltransferase Machinery gene
  ACA346_RS09800 (ACA346_09800) comGG 1928476..1928976 (-) 501 WP_418127599.1 competence type IV pilus minor pilin ComGG -
  ACA346_RS09805 (ACA346_09805) comYF 1928954..1929412 (-) 459 WP_418126814.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACA346_RS09810 (ACA346_09810) comGE 1929375..1929668 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  ACA346_RS09815 (ACA346_09815) comGD 1929640..1930044 (-) 405 WP_418126815.1 competence type IV pilus minor pilin ComGD -
  ACA346_RS09820 (ACA346_09820) comYC 1930034..1930312 (-) 279 WP_217374331.1 competence type IV pilus major pilin ComGC Machinery gene
  ACA346_RS09825 (ACA346_09825) comYB 1930314..1931351 (-) 1038 WP_318151035.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACA346_RS09830 (ACA346_09830) comYA 1931263..1932213 (-) 951 WP_318150623.1 competence type IV pilus ATPase ComGA Machinery gene
  ACA346_RS09835 (ACA346_09835) - 1932301..1933251 (+) 951 WP_418127600.1 S66 family peptidase -
  ACA346_RS09840 (ACA346_09840) - 1933312..1933653 (-) 342 WP_217374334.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39269.22 Da        Isoelectric Point: 9.2929

>NTDB_id=1036454 ACA346_RS09825 WP_318151035.1 1930314..1931351(-) (comYB) [Streptococcus parasuis strain NX1]
MSKLNAFLQRDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGNVATI
LIQHLPTIFLSFCGLFFLAVLGGLIWYHRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQE
QKSQLFREIGEDLERSLSDGHSFHSHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFTRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1036454 ACA346_RS09825 WP_318151035.1 1930314..1931351(-) (comYB) [Streptococcus parasuis strain NX1]
ATGAGCAAATTGAATGCCTTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGAGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCGGACCAATACACGCAAGTTTTGTCCGACGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTG
GGAGATTTACGCTTTTCGGATGCGGTTGTCACTCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTCTAAG
TCATATTCAATCTTATCTTGAAAATGTTAGTAAGGTCCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAATGTTGCGACTATA
TTGATTCAACACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTA
TCACAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAGTGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAGGATTTAGAGCGTTCACTTTCTGATGGGCATAGTTTCCATTCTCATAT
ACAAACGTATGGCTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGC
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTACTCGTGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCTATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

60.588

98.551

0.597
  comYB Streptococcus mutans UA140

59.824

98.841

0.591
  comYB Streptococcus mutans UA159

59.824

98.841

0.591
  comGB/cglB Streptococcus mitis SK321

60

97.101

0.583
  comGB/cglB Streptococcus mitis NCTC 12261

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae D39

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae R6

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae TIGR4

59.104

97.101

0.574
  comGB Lactococcus lactis subsp. cremoris KW2

51.335

97.681

0.501

Multiple sequence alignment