Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AB4670_RS01530 Genome accession   NZ_CP163382
Coordinates   333432..333890 (+) Length   152 a.a.
NCBI ID   WP_058061957.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Y03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328432..338890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4670_RS01510 (AB4670_01510) - 329821..330708 (+) 888 WP_001017320.1 metal-dependent hydrolase -
  AB4670_RS01515 (AB4670_01515) - 330839..331429 (+) 591 WP_000846931.1 LemA family protein -
  AB4670_RS01520 (AB4670_01520) - 331451..332533 (+) 1083 WP_373659013.1 YgcG family protein -
  AB4670_RS01525 (AB4670_01525) - 332527..333087 (+) 561 WP_000258946.1 TPM domain-containing protein -
  AB4670_RS01530 (AB4670_01530) pilA 333432..333890 (+) 459 WP_058061957.1 pilin Machinery gene
  AB4670_RS01535 (AB4670_01535) - 334158..334559 (-) 402 WP_004833671.1 type II toxin-antitoxin system VapC family toxin -
  AB4670_RS01540 (AB4670_01540) vapB 334559..334786 (-) 228 WP_002125542.1 type II toxin-antitoxin system VapB family antitoxin -
  AB4670_RS01545 (AB4670_01545) - 334939..336567 (+) 1629 WP_373659017.1 Wzy polymerase domain-containing protein -
  AB4670_RS01550 (AB4670_01550) bfr 336608..337072 (-) 465 WP_039246140.1 bacterioferritin -
  AB4670_RS01555 (AB4670_01555) - 337317..337511 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  AB4670_RS01560 (AB4670_01560) - 337721..338104 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 15122.30 Da        Isoelectric Point: 4.9984

>NTDB_id=1029462 AB4670_RS01530 WP_058061957.1 333432..333890(+) (pilA) [Acinetobacter baumannii strain Y03]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIARGEASSALASITPLKTAVEDKLANGTTDDLADVTKLGTTANANGL
GVITSTIDEATGGGSLIFTLSGSASPKTKGGVITLARDAASGTWTCTVNAKLTDYAPKGCSVAAAPPAPPAS

Nucleotide


Download         Length: 459 bp        

>NTDB_id=1029462 AB4670_RS01530 WP_058061957.1 333432..333890(+) (pilA) [Acinetobacter baumannii strain Y03]
ATGAATGCACAAAAAGGTTTTACGTTAATTGAACTCATGATCGTGGTTGCCATTATCGGTATCTTGGCAGCAATTGCGAT
TCCTGCTTATCAAAACTATATTGCTCGTGGTGAGGCAAGTTCTGCTTTGGCTAGTATTACTCCATTGAAGACTGCTGTTG
AAGATAAGTTAGCAAATGGTACAACTGATGATTTAGCAGATGTTACTAAATTAGGTACAACAGCAAATGCAAATGGTTTA
GGTGTTATTACTTCTACTATTGATGAAGCTACTGGTGGTGGTAGTTTAATTTTTACATTGAGTGGTTCTGCTAGTCCTAA
AACTAAAGGTGGTGTAATTACATTAGCGCGTGATGCTGCTTCGGGTACTTGGACATGTACTGTTAATGCGAAATTAACAG
ACTATGCACCAAAAGGTTGTAGTGTTGCTGCTGCTCCTCCTGCTCCTCCTGCTTCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-140)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

54.667

98.684

0.539
  pilA Acinetobacter baumannii strain A118

47.586

95.395

0.454
  pilA/pilAI Pseudomonas stutzeri DSM 10701

45.517

95.395

0.434
  comP Acinetobacter baylyi ADP1

43.137

100

0.434
  pilA Vibrio parahaemolyticus RIMD 2210633

47.101

90.789

0.428
  pilA Ralstonia pseudosolanacearum GMI1000

40.123

100

0.428
  pilA Vibrio cholerae C6706

42.857

96.711

0.414
  pilA Vibrio cholerae strain A1552

42.857

96.711

0.414
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

42.857

96.711

0.414
  pilA2 Legionella pneumophila strain ERS1305867

41.611

98.026

0.408
  pilA2 Legionella pneumophila str. Paris

41.333

98.684

0.408
  pilA/pilAII Pseudomonas stutzeri DSM 10701

43.571

92.105

0.401

Multiple sequence alignment