Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   AB3U99_RS19990 Genome accession   NZ_CP162613
Coordinates   4199044..4199385 (-) Length   113 a.a.
NCBI ID   WP_400243471.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4194044..4204385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS19970 (AB3U99_19995) - 4194687..4195430 (-) 744 WP_400243467.1 WecB/TagA/CpsF family glycosyltransferase -
  AB3U99_RS19975 (AB3U99_20000) - 4195829..4195972 (+) 144 WP_400243468.1 anti-repressor SinI family protein -
  AB3U99_RS19980 (AB3U99_20005) - 4196739..4197842 (-) 1104 WP_400243469.1 IS110 family transposase -
  AB3U99_RS19985 (AB3U99_20010) - 4198883..4199029 (-) 147 WP_400243470.1 hypothetical protein -
  AB3U99_RS19990 (AB3U99_20015) ssbB 4199044..4199385 (-) 342 WP_400243471.1 single-stranded DNA-binding protein Machinery gene
  AB3U99_RS19995 (AB3U99_20020) - 4199669..4201405 (-) 1737 WP_400243473.1 phospho-sugar mutase -
  AB3U99_RS20000 (AB3U99_20025) - 4201574..4202080 (-) 507 WP_400243474.1 hypothetical protein -
  AB3U99_RS20005 (AB3U99_20030) - 4202336..4204024 (+) 1689 WP_400243475.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12831.50 Da        Isoelectric Point: 8.4789

>NTDB_id=1027536 AB3U99_RS19990 WP_400243471.1 4199044..4199385(-) (ssbB) [Niallia tiangongensis strain JL1B1071]
MINQVTLVGRLTKDPELRVTQEGTSIVTVTVAVNRNYKNQAGDYDADFVQCTFWNKVAENTAQYCHKGSLVGIVGRIHTR
NYENQDSKRIYVTEVIAESVRFLSNKKVEHTIP

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1027536 AB3U99_RS19990 WP_400243471.1 4199044..4199385(-) (ssbB) [Niallia tiangongensis strain JL1B1071]
ATGATTAATCAGGTTACTTTAGTAGGAAGGCTAACGAAGGATCCAGAGCTAAGAGTCACACAAGAGGGAACCTCTATAGT
GACTGTTACTGTCGCAGTAAATAGAAACTATAAAAATCAAGCAGGCGATTATGATGCTGATTTTGTACAGTGTACGTTTT
GGAATAAGGTAGCAGAGAATACGGCACAGTATTGTCATAAGGGCTCGTTAGTAGGAATTGTTGGTCGCATCCATACAAGA
AACTATGAAAATCAGGATAGTAAAAGGATTTATGTAACAGAAGTTATAGCAGAATCCGTTCGGTTTTTAAGTAATAAAAA
AGTAGAACATACTATTCCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.633

96.46

0.575
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

93.805

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

93.805

0.487
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.226

93.805

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

93.805

0.398
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

93.805

0.398
  ssbA Streptococcus mutans UA159

42.453

93.805

0.398
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

93.805

0.389
  ssbB/cilA Streptococcus pneumoniae D39

41.509

93.805

0.389
  ssbB/cilA Streptococcus pneumoniae R6

41.509

93.805

0.389
  ssbB/cilA Streptococcus mitis SK321

41.509

93.805

0.389
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381
  ssb Staphylococcus aureus N315

38.679

93.805

0.363

Multiple sequence alignment