Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   Q9L42_RS11535 Genome accession   NZ_CP157743
Coordinates   2491234..2491698 (-) Length   154 a.a.
NCBI ID   WP_305908253.1    Uniprot ID   A0AAU7NPW5
Organism   Methylomarinum sp. Ch1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2486234..2496698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L42_RS11515 (Q9L42_011515) - 2486513..2487220 (-) 708 WP_305908257.1 methyltransferase domain-containing protein -
  Q9L42_RS11520 (Q9L42_011520) - 2487210..2488295 (-) 1086 WP_305908256.1 glycosyltransferase family 4 protein -
  Q9L42_RS11525 (Q9L42_011525) - 2488356..2489243 (-) 888 WP_305908255.1 glycosyltransferase family 2 protein -
  Q9L42_RS11530 (Q9L42_011530) - 2489203..2491167 (-) 1965 WP_305908254.1 hypothetical protein -
  Q9L42_RS11535 (Q9L42_011535) pilA/pilA1 2491234..2491698 (-) 465 WP_305908253.1 pilin Machinery gene
  Q9L42_RS11540 (Q9L42_011540) - 2492473..2493474 (+) 1002 WP_305908252.1 cytochrome-c peroxidase -
  Q9L42_RS11545 (Q9L42_011545) - 2494104..2495351 (-) 1248 WP_305908251.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 15929.02 Da        Isoelectric Point: 4.6720

>NTDB_id=1008110 Q9L42_RS11535 WP_305908253.1 2491234..2491698(-) (pilA/pilA1) [Methylomarinum sp. Ch1-1]
MKMNKAQQGFTLIELMIVVAIIGILAAIAIPAYQDYIARSQVSEGLSLSAGAKTTIAEYWASEGQYPNNNTDAGLAAASD
ISGNYVSSVTVTGSDGTDTVVNILFADQAGVSEGIRGTTLTISPRTTAGSIIWTCKPGVSGTAISTKYVPTSCR

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1008110 Q9L42_RS11535 WP_305908253.1 2491234..2491698(-) (pilA/pilA1) [Methylomarinum sp. Ch1-1]
ATGAAAATGAATAAAGCACAACAAGGTTTCACCCTGATTGAATTAATGATCGTCGTCGCGATCATCGGCATCTTGGCAGC
CATCGCGATTCCAGCTTATCAGGATTACATCGCTAGATCGCAAGTCTCAGAAGGTTTAAGCTTATCCGCTGGCGCAAAAA
CCACCATTGCTGAATATTGGGCTTCTGAAGGCCAATACCCTAATAATAATACAGACGCAGGTTTGGCTGCCGCCTCAGAC
ATTTCAGGCAACTATGTTTCTAGCGTTACCGTCACAGGTTCAGATGGCACCGACACAGTTGTTAATATCCTTTTTGCAGA
CCAGGCTGGTGTATCCGAAGGTATCCGCGGCACAACATTAACCATCAGCCCAAGAACAACGGCCGGTTCTATTATCTGGA
CCTGTAAACCTGGCGTTTCTGGAACAGCCATATCAACAAAGTACGTACCAACTTCTTGCAGATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)

Pilin (bacterial filament) (Pilin)

(38-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Eikenella corrodens VA1

45.122

100

0.481
  pilE Neisseria gonorrhoeae strain FA1090

44.512

100

0.474
  pilE Neisseria gonorrhoeae MS11

44.242

100

0.474
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.17

100

0.442
  comP Acinetobacter baylyi ADP1

40.123

100

0.422
  pilA2 Legionella pneumophila strain ERS1305867

42.953

96.753

0.416
  pilA2 Legionella pneumophila str. Paris

42.953

96.753

0.416
  pilA Acinetobacter baumannii strain A118

42.105

98.701

0.416
  pilA Ralstonia pseudosolanacearum GMI1000

38.323

100

0.416
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.865

96.104

0.383
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.662

100

0.377
  pilA Vibrio parahaemolyticus RIMD 2210633

38.514

96.104

0.37

Multiple sequence alignment