Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ABLC00_RS16985 Genome accession   NZ_CP157432
Coordinates   3625704..3626186 (-) Length   160 a.a.
NCBI ID   WP_006582551.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620704..3631186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS16965 (ABLC00_16965) bfr 3620996..3621460 (+) 465 WP_000678123.1 bacterioferritin -
  ABLC00_RS16970 (ABLC00_16970) - 3621501..3623129 (-) 1629 WP_006582554.1 PglL family O-oligosaccharyltransferase -
  ABLC00_RS16975 (ABLC00_16975) tfpZ 3623228..3623974 (-) 747 WP_006582553.1 TfpX/TfpZ family type IV pilin accessory protein -
  ABLC00_RS16980 (ABLC00_16980) - 3623979..3625634 (-) 1656 WP_033846214.1 PglL family O-oligosaccharyltransferase -
  ABLC00_RS16985 (ABLC00_16985) comP 3625704..3626186 (-) 483 WP_006582551.1 pilin Machinery gene
  ABLC00_RS16990 (ABLC00_16990) - 3626526..3627086 (-) 561 WP_006582550.1 TPM domain-containing protein -
  ABLC00_RS16995 (ABLC00_16995) - 3627080..3628162 (-) 1083 WP_006582549.1 YgcG family protein -
  ABLC00_RS17000 (ABLC00_17000) - 3628184..3628774 (-) 591 WP_002051712.1 LemA family protein -
  ABLC00_RS17005 (ABLC00_17005) - 3628910..3629797 (-) 888 WP_032011719.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 16295.56 Da        Isoelectric Point: 8.1045

>NTDB_id=1006816 ABLC00_RS16985 WP_006582551.1 3625704..3626186(-) (comP) [Acinetobacter nosocomialis strain XH1679]
MNAQKGFTLIELMIVVAIIGILAAVALPAYQDYTVRAKVSEAILAGSACRTTVTEVYQSASGSLPAANGWGCEVGSTTSA
ASKYVQQVQTDQNGVITVTTTNDSSLKAAGNSTIVMTPTLANGTAMTNTNIGTSVGAWKCGPGTTNPMPTKFLPGSCRGA

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1006816 ABLC00_RS16985 WP_006582551.1 3625704..3626186(-) (comP) [Acinetobacter nosocomialis strain XH1679]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTTGTAGCGATTATTGGTATTTTAGCAGCTGTCGCATT
ACCTGCATATCAAGATTATACAGTTCGTGCAAAAGTATCTGAGGCAATTTTAGCTGGTTCAGCATGCCGTACGACTGTAA
CTGAAGTTTATCAATCGGCAAGTGGTTCTTTACCAGCAGCAAATGGGTGGGGATGTGAAGTTGGTTCTACTACAAGTGCA
GCTTCTAAATATGTGCAGCAAGTACAAACAGATCAAAATGGTGTAATTACTGTAACTACTACAAATGACTCATCTTTAAA
GGCTGCTGGAAATAGTACGATTGTTATGACACCAACTTTAGCTAATGGTACTGCTATGACAAATACAAATATTGGTACTT
CTGTTGGTGCGTGGAAATGTGGCCCAGGTACTACAAATCCTATGCCTACAAAATTTTTACCAGGTTCATGCCGCGGTGCT
TAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

45.882

100

0.487
  pilA2 Legionella pneumophila str. Paris

46.154

97.5

0.45
  pilA2 Legionella pneumophila strain ERS1305867

46.154

97.5

0.45
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.5

100

0.45
  pilE Neisseria gonorrhoeae strain FA1090

39.881

100

0.419
  pilE Neisseria gonorrhoeae MS11

39.286

100

0.413
  pilA Ralstonia pseudosolanacearum GMI1000

38.596

100

0.412
  pilA/pilA1 Eikenella corrodens VA1

37.647

100

0.4
  pilA Pseudomonas aeruginosa PAK

36.97

100

0.381
  pilA Acinetobacter baumannii strain A118

37.736

99.375

0.375
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.943

98.125

0.363
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.709

98.75

0.363

Multiple sequence alignment