Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | ABFU04_RS05250 | Genome accession | NZ_CP155965 |
| Coordinates | 1258418..1258867 (+) | Length | 149 a.a. |
| NCBI ID | WP_225042506.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. raphani strain BR11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1253418..1263867
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFU04_RS05230 (ABFU04_05220) | - | 1253463..1254797 (+) | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
| ABFU04_RS05235 (ABFU04_05230) | coaE | 1255346..1255969 (-) | 624 | WP_228876559.1 | dephospho-CoA kinase | - |
| ABFU04_RS05240 (ABFU04_05235) | - | 1255983..1256846 (-) | 864 | WP_228876553.1 | A24 family peptidase | - |
| ABFU04_RS05245 (ABFU04_05240) | pilC | 1256853..1258106 (-) | 1254 | WP_225042505.1 | type II secretion system F family protein | Machinery gene |
| ABFU04_RS05250 (ABFU04_05245) | pilA2 | 1258418..1258867 (+) | 450 | WP_225042506.1 | pilin | Machinery gene |
| ABFU04_RS05255 (ABFU04_05250) | pilB | 1259024..1260757 (+) | 1734 | WP_228957556.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABFU04_RS05260 (ABFU04_05255) | pilR | 1261174..1262568 (-) | 1395 | WP_228957555.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 14989.26 Da Isoelectric Point: 9.1351
>NTDB_id=1000388 ABFU04_RS05250 WP_225042506.1 1258418..1258867(+) (pilA2) [Xanthomonas campestris pv. raphani strain BR11]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRAKVSEGIVQASAAKLAVAETASSLNGLANVTAANSGYAFTANST
TNVASIGVGANGVINVVTRNTGATTQPAIRLTPTQADANAPIVWACSLVAGEAKHVPATCRTAAPAAAP
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRAKVSEGIVQASAAKLAVAETASSLNGLANVTAANSGYAFTANST
TNVASIGVGANGVINVVTRNTGATTQPAIRLTPTQADANAPIVWACSLVAGEAKHVPATCRTAAPAAAP
Nucleotide
Download Length: 450 bp
>NTDB_id=1000388 ABFU04_RS05250 WP_225042506.1 1258418..1258867(+) (pilA2) [Xanthomonas campestris pv. raphani strain BR11]
ATGAAAAAGCAGCAAGGTTTTACACTTATCGAACTGATGATCGTGGTGGCGATCATTGCTATCTTGGCGGCTATTGCTCT
GCCGGCTTATCAGGATTACACCATTCGTGCCAAGGTGTCGGAAGGCATCGTGCAGGCGTCGGCTGCTAAGCTGGCCGTGG
CGGAGACAGCATCTTCTTTGAATGGTTTGGCTAACGTGACCGCCGCCAATTCGGGATATGCTTTCACTGCAAACTCGACA
ACCAACGTTGCTAGCATCGGCGTAGGCGCCAATGGCGTTATCAATGTTGTAACGCGTAATACAGGTGCTACTACGCAGCC
GGCCATCCGTTTGACTCCGACTCAGGCGGATGCGAACGCACCGATCGTGTGGGCATGCAGCTTGGTTGCCGGCGAGGCAA
AGCACGTTCCTGCAACTTGCCGTACTGCTGCTCCTGCCGCAGCACCTTAA
ATGAAAAAGCAGCAAGGTTTTACACTTATCGAACTGATGATCGTGGTGGCGATCATTGCTATCTTGGCGGCTATTGCTCT
GCCGGCTTATCAGGATTACACCATTCGTGCCAAGGTGTCGGAAGGCATCGTGCAGGCGTCGGCTGCTAAGCTGGCCGTGG
CGGAGACAGCATCTTCTTTGAATGGTTTGGCTAACGTGACCGCCGCCAATTCGGGATATGCTTTCACTGCAAACTCGACA
ACCAACGTTGCTAGCATCGGCGTAGGCGCCAATGGCGTTATCAATGTTGTAACGCGTAATACAGGTGCTACTACGCAGCC
GGCCATCCGTTTGACTCCGACTCAGGCGGATGCGAACGCACCGATCGTGTGGGCATGCAGCTTGGTTGCCGGCGAGGCAA
AGCACGTTCCTGCAACTTGCCGTACTGCTGCTCCTGCCGCAGCACCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
56.115 |
93.289 |
0.523 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
55.396 |
93.289 |
0.517 |
| comP | Acinetobacter baylyi ADP1 |
44.667 |
100 |
0.45 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40 |
100 |
0.443 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
36.31 |
100 |
0.409 |
| pilE | Neisseria gonorrhoeae MS11 |
37.654 |
100 |
0.409 |
| pilA | Pseudomonas aeruginosa PAK |
35.948 |
100 |
0.369 |
| pilA | Haemophilus influenzae Rd KW20 |
38.732 |
95.302 |
0.369 |
| pilA/pilA1 | Eikenella corrodens VA1 |
35.762 |
100 |
0.362 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.571 |
93.96 |
0.362 |